Detailed information NTG0089288

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU56_RS10590
• Genome accession: NZ_AP024900
• Coordinates: 2335204..2336181 (-)
• Length: 325 a.a.
• NCBI ID: WP_261873186.1
• Uniprot ID: -
• Organism: Vibrio rarus strain LMG 23674
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2330204..2341181

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU56_RS10570	recX	2330289..2330759 (-)	471	WP_261873182.1	recombination regulator RecX	-
OCU56_RS10575	recA	2330869..2331906 (-)	1038	WP_390904838.1	recombinase RecA	Machinery gene
OCU56_RS10580	pncC	2332000..2332494 (-)	495	WP_261873184.1	nicotinamide-nucleotide amidase	-
OCU56_RS10585	mutS	2332577..2335144 (+)	2568	WP_261873185.1	DNA mismatch repair protein MutS	-
OCU56_RS10590	rpoS	2335204..2336181 (-)	978	WP_261873186.1	RNA polymerase sigma factor RpoS	Regulator
OCU56_RS10595	-	2336232..2337077 (-)	846	WP_261873187.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCU56_RS10600	-	2337082..2337708 (-)	627	WP_261873188.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU56_RS10605	surE	2337712..2338452 (-)	741	WP_261873189.1	5'/3'-nucleotidase SurE	-
OCU56_RS10610	truD	2338465..2339496 (-)	1032	WP_261873190.1	tRNA pseudouridine(13) synthase TruD	-
OCU56_RS10615	ispF	2339513..2339992 (-)	480	WP_261873191.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU56_RS10620	ispD	2340017..2340709 (-)	693	WP_261873192.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU56_RS10625	ftsB	2340730..2341005 (-)	276	WP_261873193.1	cell division protein FtsB	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37075.02 Da
• Isoelectric Point: 4.5971

>NTDB_id=89288 OCU56_RS10590 WP_261873186.1 2335204..2336181(-) (rpoS) [Vibrio rarus strain LMG 23674]
MSLDNTAVKVEDLVEEKPTADVEATGIVEPVEQTSAKEEFDASAKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDE
AARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLP
IHVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGDGDKALLDIIPDINNSDPEV
STQDDDIKHSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILLKQGLNMESLF
NVEND

Nucleotide

• Length: 978 bp

>NTDB_id=89288 OCU56_RS10590 WP_261873186.1 2335204..2336181(-) (rpoS) [Vibrio rarus strain LMG 23674]
ATGAGTCTGGATAACACAGCAGTAAAAGTAGAAGATTTAGTAGAAGAAAAACCAACGGCTGACGTTGAAGCAACAGGCAT
TGTTGAGCCAGTGGAGCAAACATCCGCAAAAGAGGAGTTTGATGCATCGGCCAAAAACTTAGATGCGACTCAGCTCTATC
TTGGTGAAATTGGTTTTTCCCCTTTGCTTACCGCAGAGGAAGAAGTGCTTTATGCTAGACGAGCTCTGCGTGGTGATGAG
GCCGCTCGCAAACGTATGATTGAAAGTAACCTGCGTCTAGTGGTTAAAATATCCCGTCGTTATAGCAACCGTGGCTTGGC
TCTGCTCGATCTGATTGAGGAAGGTAACCTTGGGCTCATTCGAGCGGTAGAAAAATTCGATCCTGAGCGTGGTTTTCGTT
TCTCTACTTACGCCACTTGGTGGATTCGTCAAACTATCGAACGCGCCTTAATGAACCAAACCCGCACCATTCGCTTGCCT
ATTCATGTGGTTAAAGAGCTGAATATTTATCTGCGTACTGCTCGTGAGCTGTCGCAAAAACTGGATCACGAACCCACAGC
GGAAGAAATTGCCCAACAACTGGATAAGCCGGTTGACGATGTTAGTAAGATGCTTCGTTTAAATGAGCGAGTCAGCTCGG
TTGATACCCCTATCGGCGGTGATGGCGACAAAGCACTATTGGATATTATCCCTGATATTAATAACTCCGACCCAGAAGTA
TCCACTCAAGACGACGATATTAAGCACTCACTAATTGATTGGCTAGATGAGCTCAATCCAAAACAAAAAGAAGTCCTTGC
CCGTCGTTTTGGTTTGCTAGGTTATGAGCCATCCACGTTAGAAGAAGTGGGACGAGAAATAAGCCTGACACGAGAGCGTG
TTCGTCAGATCCAAGTGGAAGGATTACGCCGACTTAGAGAGATCCTCCTAAAACAAGGCTTGAACATGGAATCCCTGTTC
AACGTTGAGAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (166-239)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (48-81)

• Sigma-70 region 2 (Sigma70_r2) (86-155)

• Sigma-70, region 4 (Sigma70_r4) (254-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.858