Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   R1T10_RS10715 Genome accession   NZ_CP136807
Coordinates   2149844..2150542 (-) Length   232 a.a.
NCBI ID   WP_002224844.1    Uniprot ID   Q9K189
Organism   Neisseria meningitidis NMB     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2144844..2155542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS10700 - 2145130..2146200 (-) 1071 WP_002244399.1 peptidylprolyl isomerase -
  R1T10_RS10705 - 2146305..2148713 (-) 2409 WP_002244398.1 LPS-assembly protein LptD -
  R1T10_RS10710 amgK 2148783..2149787 (+) 1005 WP_002221934.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  R1T10_RS10715 dsbA1 2149844..2150542 (-) 699 WP_002224844.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  R1T10_RS10720 - 2150569..2150760 (+) 192 WP_002260368.1 hypothetical protein -
  R1T10_RS10725 murJ 2150760..2152298 (+) 1539 WP_002226012.1 murein biosynthesis integral membrane protein MurJ -
  R1T10_RS10730 - 2152431..2153387 (+) 957 WP_002226011.1 YheT family hydrolase -
  R1T10_RS10735 trpC 2153438..2154220 (+) 783 WP_002226010.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25249.83 Da        Isoelectric Point: 5.6277

>NTDB_id=892873 R1T10_RS10715 WP_002224844.1 2149844..2150542(-) (dsbA1) [Neisseria meningitidis NMB]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=892873 R1T10_RS10715 WP_002224844.1 2149844..2150542(-) (dsbA1) [Neisseria meningitidis NMB]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3A3T
  PDB 3DVW
  PDB 3HZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

100

100

1
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621