Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   R1T10_RS10050 Genome accession   NZ_CP136807
Coordinates   2002066..2002611 (+) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis NMB     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997066..2007611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS10030 - 1997135..1999531 (-) 2397 WP_002221477.1 penicillin-binding protein 1A -
  R1T10_RS10035 - 1999683..2000798 (+) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  R1T10_RS10040 pilN 2000801..2001400 (+) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  R1T10_RS10045 - 2001401..2002048 (+) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  R1T10_RS10050 pilP 2002066..2002611 (+) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  R1T10_RS10055 pilQ 2002630..2004915 (+) 2286 WP_002214524.1 type IV pilus secretin PilQ Machinery gene
  R1T10_RS10060 - 2005877..2006389 (+) 513 WP_002214526.1 shikimate kinase -
  R1T10_RS10065 aroB 2006469..2007548 (+) 1080 WP_002221481.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=892870 R1T10_RS10050 WP_002214522.1 2002066..2002611(+) (pilP) [Neisseria meningitidis NMB]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=892870 R1T10_RS10050 WP_002214522.1 2002066..2002611(+) (pilP) [Neisseria meningitidis NMB]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1