Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   R1T10_RS04190 Genome accession   NZ_CP136807
Coordinates   825835..826299 (+) Length   154 a.a.
NCBI ID   WP_014580830.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 820835..831299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS04190 comE 825835..826299 (+) 465 WP_014580830.1 helix-hairpin-helix domain-containing protein Machinery gene
  R1T10_RS04195 - 826230..826850 (-) 621 WP_002245145.1 HK97 family phage prohead protease -
  R1T10_RS04200 - 826962..827555 (-) 594 WP_002226163.1 hypothetical protein -
  R1T10_RS04205 prmB 827700..828599 (+) 900 WP_002235090.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  R1T10_RS04210 - 828880..829617 (+) 738 WP_002220248.1 toxin-antitoxin system YwqK family antitoxin -
  R1T10_RS04215 - 829743..830015 (+) 273 WP_002212673.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16519.75 Da        Isoelectric Point: 10.9695

>NTDB_id=892847 R1T10_RS04190 WP_014580830.1 825835..826299(+) (comE) [Neisseria meningitidis NMB]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=892847 R1T10_RS04190 WP_014580830.1 825835..826299(+) (comE) [Neisseria meningitidis NMB]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74