Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   R1T10_RS02790 Genome accession   NZ_CP136807
Coordinates   537514..537978 (+) Length   154 a.a.
NCBI ID   WP_014580830.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 532514..542978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS02790 comE 537514..537978 (+) 465 WP_014580830.1 helix-hairpin-helix domain-containing protein Machinery gene
  R1T10_RS02795 - 538090..538548 (+) 459 WP_002234522.1 hypothetical protein -
  R1T10_RS02800 - 538652..538756 (+) 105 Protein_528 IS1595 family transposase -
  R1T10_RS02805 - 538805..539062 (-) 258 WP_025462989.1 membrane protein -
  R1T10_RS02810 - 539340..539567 (+) 228 WP_153308417.1 hypothetical protein -
  R1T10_RS02815 aroG 539729..540784 (+) 1056 WP_002216371.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  R1T10_RS02820 - 540852..541340 (+) 489 WP_002218701.1 dihydrofolate reductase -
  R1T10_RS02825 - 541690..542166 (-) 477 WP_002226026.1 CYTH domain-containing protein -
  R1T10_RS02830 - 542178..542606 (-) 429 WP_002226027.1 CopD family protein -
  R1T10_RS02835 - 542718..542963 (+) 246 WP_002226028.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16519.75 Da        Isoelectric Point: 10.9695

>NTDB_id=892838 R1T10_RS02790 WP_014580830.1 537514..537978(+) (comE) [Neisseria meningitidis NMB]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=892838 R1T10_RS02790 WP_014580830.1 537514..537978(+) (comE) [Neisseria meningitidis NMB]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74