Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABDT56_RS09960 Genome accession   NZ_CP152467
Coordinates   1994108..1994764 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain Sel(aux star)     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1989108..1999764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDT56_RS09930 yecA 1990359..1991024 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  ABDT56_RS09950 pgsA 1991674..1992222 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABDT56_RS09955 uvrC 1992279..1994111 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ABDT56_RS09960 letA 1994108..1994764 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABDT56_RS09965 - 1994906..1994977 (+) 72 Protein_1949 transcriptional regulator -
  ABDT56_RS09970 yecU 1995060..1995236 (+) 177 WP_000590347.1 protein YecU -
  ABDT56_RS09975 yecF 1995223..1995447 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABDT56_RS09980 sdiA 1995515..1996237 (-) 723 WP_001152715.1 transcriptional regulator SdiA -
  ABDT56_RS09985 tcyN 1996467..1997219 (-) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABDT56_RS09990 tcyL 1997216..1997884 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  ABDT56_RS09995 dcyD 1997899..1998885 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=892836 ABDT56_RS09960 WP_000611335.1 1994108..1994764(-) (letA) [Escherichia coli strain Sel(aux star)]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=892836 ABDT56_RS09960 WP_000611335.1 1994108..1994764(-) (letA) [Escherichia coli strain Sel(aux star)]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486