Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU56_RS04120 Genome accession   NZ_AP024900
Coordinates   871625..873028 (+) Length   467 a.a.
NCBI ID   WP_261874279.1    Uniprot ID   -
Organism   Vibrio rarus strain LMG 23674     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 866625..878028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU56_RS04100 rsxB 867464..868045 (-) 582 WP_261874276.1 electron transport complex subunit RsxB -
  OCU56_RS04105 rsxA 868045..868626 (-) 582 WP_261874277.1 electron transport complex subunit RsxA -
  OCU56_RS04115 uvrB 869539..871584 (+) 2046 WP_261874278.1 excinuclease ABC subunit UvrB -
  OCU56_RS04120 luxO 871625..873028 (+) 1404 WP_261874279.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU56_RS04125 - 873021..873371 (+) 351 WP_261874280.1 Hpt domain-containing protein -
  OCU56_RS04130 yvcK 873368..874264 (-) 897 WP_261874281.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU56_RS04135 moaA 874596..875585 (+) 990 WP_261874282.1 GTP 3',8-cyclase MoaA -
  OCU56_RS04140 moaB 875640..876152 (+) 513 WP_261874283.1 molybdenum cofactor biosynthesis protein B -
  OCU56_RS04145 moaC 876159..876638 (+) 480 WP_261874284.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU56_RS04150 moaD 876635..876880 (+) 246 WP_261874285.1 molybdopterin synthase sulfur carrier subunit -
  OCU56_RS04155 moaE 876882..877331 (+) 450 WP_261874286.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51782.30 Da        Isoelectric Point: 5.6215

>NTDB_id=89276 OCU56_RS04120 WP_261874279.1 871625..873028(+) (luxO) [Vibrio rarus strain LMG 23674]
MSNNKIENTQLTLLMVEDTLSVATLYKTYLATLNLDIHIVSSGEAALKHLEQNTIDLMLLDLRLPDMTGMDVLNKVSIQA
PKVPVIFMTAHGSIEVAVAAMRAGAHDFLIKPCEADQLRITVSKAIHQTQNIKHDILGEVNQYQGFIGSSPSMQKVYKTI
DSAASSKASIFITGESGTGKEVCAEAIHSVSNRSTGPCIALNCAAIPKDLIESELFGHVKGAFTGAAIDRKGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTYQKVGSSKLSRVDVRFVCATNKDPWQEVRKGRFREDLYYRLYVIPLHLPPLRER
GDDIIEIAHSLLGFTSLEENKHFGKFQEQVLRHFVHYPWPGNVRQLQNVIRNIVVLNEGEEVTLDMLPAPLDCFRVDSYS
EDAIDTFLDPEKSEDTNKIVPLAQVERRAIERAIELCGGSIPAAASELDVSASTLYRKLEKWEKGRG

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=89276 OCU56_RS04120 WP_261874279.1 871625..873028(+) (luxO) [Vibrio rarus strain LMG 23674]
ATGTCGAATAATAAAATAGAAAACACTCAGTTAACCTTACTGATGGTAGAAGATACCTTGTCAGTGGCTACCTTGTACAA
AACGTATCTCGCGACACTGAATTTGGACATCCACATTGTCTCAAGTGGTGAGGCGGCGTTAAAACATCTAGAGCAGAATA
CCATTGATCTAATGTTGCTGGATTTGCGCCTGCCGGATATGACGGGCATGGATGTATTGAACAAAGTGAGTATTCAAGCC
CCCAAAGTTCCGGTTATTTTTATGACCGCGCACGGCTCTATAGAAGTGGCCGTTGCAGCAATGCGAGCAGGGGCACATGA
CTTTCTCATTAAACCTTGTGAGGCGGATCAACTGCGCATCACAGTGTCAAAAGCCATCCACCAAACACAAAATATTAAGC
ACGATATTCTTGGCGAAGTGAATCAATATCAAGGATTTATTGGTTCCAGCCCCAGCATGCAGAAAGTGTATAAAACCATA
GATTCTGCAGCATCCAGTAAGGCAAGTATTTTTATTACAGGAGAAAGTGGTACAGGTAAAGAAGTGTGTGCAGAGGCGAT
TCATTCGGTGAGTAATCGCAGCACAGGGCCTTGTATTGCTCTTAACTGTGCAGCCATCCCTAAAGACTTGATTGAAAGTG
AACTGTTTGGGCATGTAAAAGGCGCGTTTACTGGTGCGGCTATCGATCGCAAAGGCGCAGCTGAATTAGCTGATGGTGGT
ACCTTATTTTTAGATGAATTGTGTGAAATGGATTTAGATTTGCAAACTAAACTGTTGCGCTTTATCCAAACGGGTACCTA
TCAAAAAGTAGGTTCCTCAAAATTAAGTCGGGTGGATGTACGCTTTGTGTGTGCCACCAATAAAGATCCATGGCAAGAGG
TACGTAAAGGCCGTTTCCGTGAAGATCTGTACTATCGTCTATACGTGATCCCTCTGCATTTGCCACCGCTAAGAGAGAGA
GGGGATGATATTATTGAAATTGCCCACTCTTTATTAGGCTTTACTTCATTGGAAGAAAATAAGCATTTTGGTAAGTTTCA
GGAACAAGTGCTGCGCCATTTTGTGCATTATCCTTGGCCTGGTAACGTGCGTCAGCTACAAAATGTGATTCGTAATATTG
TGGTATTAAACGAAGGGGAAGAAGTCACCCTAGATATGTTACCTGCGCCTTTAGACTGCTTTCGAGTAGATTCTTATTCT
GAAGACGCCATTGACACTTTTCTCGACCCCGAGAAAAGTGAAGATACCAATAAAATTGTTCCGTTAGCACAAGTGGAACG
TCGAGCAATTGAAAGAGCGATAGAGTTATGCGGTGGTAGTATTCCCGCCGCAGCCTCAGAATTGGACGTCAGTGCATCCA
CACTCTATCGAAAACTGGAAAAATGGGAGAAAGGACGTGGATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

67.857

95.931

0.651

Multiple sequence alignment