Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | OCU56_RS00575 | Genome accession | NZ_AP024900 |
| Coordinates | 124876..125424 (+) | Length | 182 a.a. |
| NCBI ID | WP_261873679.1 | Uniprot ID | - |
| Organism | Vibrio rarus strain LMG 23674 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 119876..130424
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCU56_RS00550 | - | 121007..121507 (+) | 501 | WP_261873674.1 | type II secretion system protein M | - |
| OCU56_RS00555 | - | 121507..122280 (+) | 774 | WP_261873675.1 | type II secretion system protein N | - |
| OCU56_RS00560 | nudE | 122405..122968 (+) | 564 | WP_261873676.1 | ADP compounds hydrolase NudE | - |
| OCU56_RS00565 | cysQ | 122968..123786 (+) | 819 | WP_261873677.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| OCU56_RS00570 | bioH | 123792..124556 (-) | 765 | WP_261873678.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| OCU56_RS00575 | comF | 124876..125424 (+) | 549 | WP_261873679.1 | ComF family protein | Machinery gene |
| OCU56_RS00580 | nfuA | 125580..126170 (+) | 591 | WP_261873680.1 | Fe-S biogenesis protein NfuA | - |
| OCU56_RS00585 | envZ | 126243..127631 (-) | 1389 | WP_261873681.1 | two-component system sensor histidine kinase EnvZ | - |
| OCU56_RS00590 | ompR | 127647..128366 (-) | 720 | WP_261873682.1 | two-component system response regulator OmpR | - |
| OCU56_RS00595 | greB | 128574..129080 (-) | 507 | WP_261873683.1 | transcription elongation factor GreB | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20995.49 Da Isoelectric Point: 10.5298
>NTDB_id=89270 OCU56_RS00575 WP_261873679.1 124876..125424(+) (comF) [Vibrio rarus strain LMG 23674]
MSEPPCWDQLFCVGEYQVPLSRYIQGLKYRRQVWHAPELATLLAGEITTPAPILLSIPLHWRRQLWRGFNQSDYLARNLL
QVWDNAHGGGRAIRYLAKAVKRTKVTRNQMGLNRRQRLLNLKQAFELTEKHLPSLQNQPHVAIIDDVVTTGSTVSEICKL
LRKQGVQRIDIYCICRASKPVK
MSEPPCWDQLFCVGEYQVPLSRYIQGLKYRRQVWHAPELATLLAGEITTPAPILLSIPLHWRRQLWRGFNQSDYLARNLL
QVWDNAHGGGRAIRYLAKAVKRTKVTRNQMGLNRRQRLLNLKQAFELTEKHLPSLQNQPHVAIIDDVVTTGSTVSEICKL
LRKQGVQRIDIYCICRASKPVK
Nucleotide
Download Length: 549 bp
>NTDB_id=89270 OCU56_RS00575 WP_261873679.1 124876..125424(+) (comF) [Vibrio rarus strain LMG 23674]
GTGTCCGAACCGCCATGTTGGGATCAGCTGTTTTGCGTGGGGGAATACCAAGTGCCGTTGTCTCGATATATTCAAGGGCT
TAAATATCGGCGACAGGTGTGGCATGCCCCCGAACTGGCTACTTTACTGGCGGGTGAAATTACCACTCCAGCCCCCATCT
TGTTGTCCATCCCTTTGCACTGGCGAAGGCAATTATGGCGTGGTTTTAATCAAAGTGATTACCTAGCCCGCAACCTGTTA
CAAGTATGGGATAACGCACATGGTGGTGGGAGGGCTATTCGCTATTTAGCTAAAGCAGTTAAGCGCACTAAAGTGACGCG
TAATCAAATGGGGTTAAATCGCCGTCAGCGTCTTCTCAATTTAAAACAAGCATTTGAATTAACAGAAAAGCACTTACCTA
GTCTACAAAATCAACCACATGTGGCCATTATCGATGACGTGGTGACCACTGGAAGTACGGTCAGTGAAATATGTAAATTA
CTTCGTAAACAAGGAGTACAACGAATTGATATTTATTGCATTTGTCGAGCTTCTAAGCCAGTTAAGTAA
GTGTCCGAACCGCCATGTTGGGATCAGCTGTTTTGCGTGGGGGAATACCAAGTGCCGTTGTCTCGATATATTCAAGGGCT
TAAATATCGGCGACAGGTGTGGCATGCCCCCGAACTGGCTACTTTACTGGCGGGTGAAATTACCACTCCAGCCCCCATCT
TGTTGTCCATCCCTTTGCACTGGCGAAGGCAATTATGGCGTGGTTTTAATCAAAGTGATTACCTAGCCCGCAACCTGTTA
CAAGTATGGGATAACGCACATGGTGGTGGGAGGGCTATTCGCTATTTAGCTAAAGCAGTTAAGCGCACTAAAGTGACGCG
TAATCAAATGGGGTTAAATCGCCGTCAGCGTCTTCTCAATTTAAAACAAGCATTTGAATTAACAGAAAAGCACTTACCTA
GTCTACAAAATCAACCACATGTGGCCATTATCGATGACGTGGTGACCACTGGAAGTACGGTCAGTGAAATATGTAAATTA
CTTCGTAAACAAGGAGTACAACGAATTGATATTTATTGCATTTGTCGAGCTTCTAAGCCAGTTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
51.667 |
98.901 |
0.511 |
| comF | Vibrio campbellii strain DS40M4 |
44.444 |
98.901 |
0.44 |
| comF | Haemophilus influenzae 86-028NP |
37.766 |
100 |
0.39 |
| comF | Haemophilus influenzae Rd KW20 |
37.766 |
100 |
0.39 |