Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   R1Z03_RS18410 Genome accession   NZ_CP136797
Coordinates   3999935..4001521 (+) Length   528 a.a.
NCBI ID   WP_317360421.1    Uniprot ID   -
Organism   Acidovorax sp. BLS4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3994935..4006521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Z03_RS18385 (R1Z03_18385) argS 3995121..3996929 (+) 1809 WP_317353709.1 arginine--tRNA ligase -
  R1Z03_RS18390 (R1Z03_18390) - 3996942..3997589 (+) 648 WP_284413356.1 SPOR domain-containing protein -
  R1Z03_RS18395 (R1Z03_18395) - 3997647..3998306 (+) 660 WP_284413358.1 thiol:disulfide interchange protein DsbA/DsbL -
  R1Z03_RS18400 (R1Z03_18400) lptA 3998411..3999064 (+) 654 WP_317353717.1 lipopolysaccharide transport periplasmic protein LptA -
  R1Z03_RS18405 (R1Z03_18405) lptB 3999064..3999846 (+) 783 WP_317353720.1 LPS export ABC transporter ATP-binding protein -
  R1Z03_RS18410 (R1Z03_18410) rpoN/rpoN1 3999935..4001521 (+) 1587 WP_317360421.1 RNA polymerase factor sigma-54 Machinery gene
  R1Z03_RS18415 (R1Z03_18415) - 4001548..4002093 (-) 546 WP_317353723.1 TspO/MBR family protein -
  R1Z03_RS18420 (R1Z03_18420) - 4002307..4004169 (-) 1863 WP_317353726.1 methyl-accepting chemotaxis protein -
  R1Z03_RS18425 (R1Z03_18425) - 4004376..4005647 (+) 1272 WP_317353729.1 THUMP domain-containing protein -
  R1Z03_RS18430 (R1Z03_18430) - 4005637..4006116 (+) 480 WP_317353732.1 putative toxin-antitoxin system toxin component, PIN family -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 57519.54 Da        Isoelectric Point: 4.6522

>NTDB_id=892671 R1Z03_RS18410 WP_317360421.1 3999935..4001521(+) (rpoN/rpoN1) [Acidovorax sp. BLS4]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFGLPQADAPVSEDDRHTEEAIY
SGAPGESSAAVESSSEGDAASAAEAPGSADAPDWEGDGTVEMAPDDGEWGGDAPARTRTAGEGDEADATELARSHESLTA
YLHRQALGLRLSEVDTAALRFLIESLNDDGYLEESLPSLAVSLAGEDDTEQVEELVHRFTVALGLLQSLDPVGVGARGLA
ECLTLQLKALREDGEGDPDVVQTALRICQQPLEMLARRDVRRLAQACGGGEERTRAAMALIARLEPRPGRAFAEVERNII
VPDVIVKKTGRGTQQNFSVQLNPDVMPRLRVHDIYAGALRGNRGGEGHQGLQQRLQEARWFIKNIQQRFDTILRVSRAIV
DRQKNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQFV
SAESPAKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=892671 R1Z03_RS18410 WP_317360421.1 3999935..4001521(+) (rpoN/rpoN1) [Acidovorax sp. BLS4]
ATGAAGCCGGGGCTGTCGCTGCGCGTCTCGCAGCATCTGGCACTCACGCCGCAGTTGCAGCAGTCCATCCGGCTGCTGCA
GTTGTCCACCCTGGAACTGTCGCAAGAGGTCGAGCAGATGCTCGACGAAAACCCCTTCCTCGAACGCACCGCCGAAGAGG
CCGCGCGCGAAGAATTCGGCCTGCCGCAGGCCGATGCGCCCGTGAGCGAGGACGATCGCCACACCGAAGAGGCCATCTAT
TCCGGCGCGCCCGGCGAGTCCAGCGCGGCGGTGGAGTCCTCTTCGGAGGGCGATGCCGCGAGCGCCGCCGAGGCGCCGGG
CAGCGCCGACGCCCCCGACTGGGAGGGCGACGGCACCGTCGAGATGGCGCCGGACGACGGCGAATGGGGCGGCGACGCCC
CGGCGCGCACGCGCACGGCCGGCGAGGGCGACGAAGCCGATGCCACCGAACTGGCCCGCAGCCACGAGTCGCTCACCGCC
TACCTGCACCGGCAGGCGCTGGGCCTGCGCCTGTCCGAGGTCGACACCGCCGCTTTGCGCTTTCTCATCGAGTCGCTCAA
CGACGATGGCTACCTGGAAGAATCGCTGCCGTCGCTCGCCGTGAGCCTGGCGGGCGAGGACGACACCGAGCAGGTCGAGG
AGCTGGTGCACCGCTTCACCGTGGCGCTGGGCCTGCTGCAGAGCCTGGACCCGGTGGGCGTGGGCGCGCGCGGACTGGCC
GAGTGCCTGACCCTGCAGCTCAAGGCGCTGCGCGAGGACGGCGAGGGCGACCCCGACGTGGTGCAGACCGCGCTGCGCAT
CTGCCAACAGCCGCTGGAGATGCTCGCGCGGCGCGACGTGCGCCGCCTGGCGCAGGCCTGCGGCGGCGGCGAGGAGCGCA
CGCGCGCGGCCATGGCGCTGATCGCCCGCCTGGAGCCCCGGCCCGGCCGCGCCTTCGCCGAGGTGGAGCGCAACATCATC
GTGCCCGACGTCATCGTGAAGAAGACCGGGCGCGGCACGCAGCAGAACTTCAGCGTGCAGCTCAACCCCGATGTGATGCC
GCGCCTGCGCGTGCACGACATCTACGCCGGCGCGCTGCGCGGCAACCGTGGCGGCGAGGGCCACCAGGGCCTGCAGCAGC
GGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTGTCGCGCGCCATCGTG
GACCGGCAGAAGAACTTCTTCGTGCACGGCGAGCTGGCCATGCGGCCGCTGGTGCTGCGCGACATCGCCGATGAACTGGG
CCTGCACGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCACGCCGCAGGGCACGTACGAACTCAAGTATT
TCTTCGGCTCGGGCCTGGGCACCGAGACCGGGGGCAACGCCTCCAGCACGGCGGTGCGGGCACTCATCAAGCAGTTCGTC
TCGGCCGAGAGCCCGGCCAAGCCGCTGTCGGACAGCCAGATCGCCGAGATGCTGAAGGAGCAGGGCATCGAGTGCGCACG
CCGCACCGTGGCCAAGTACCGCGAGGCGCTCAAGATCGCGCCGGCCAACCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-355)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(370-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.22

100

0.532