Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   OCV11_RS14100 Genome accession   NZ_AP024895
Coordinates   3100629..3101246 (+) Length   205 a.a.
NCBI ID   WP_261893607.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095629..3106246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS14075 panC 3096112..3096990 (+) 879 WP_261893599.1 pantoate--beta-alanine ligase -
  OCV11_RS14080 - 3097063..3097833 (-) 771 WP_261893601.1 ABC transporter permease -
  OCV11_RS14085 - 3097842..3098756 (-) 915 WP_261893603.1 ABC transporter ATP-binding protein -
  OCV11_RS14090 can 3099017..3099685 (+) 669 WP_261893604.1 carbonate dehydratase -
  OCV11_RS14095 hpt 3099767..3100297 (-) 531 WP_261893606.1 hypoxanthine phosphoribosyltransferase -
  OCV11_RS14100 hapR 3100629..3101246 (+) 618 WP_261893607.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV11_RS14105 lpdA 3101355..3102782 (-) 1428 WP_261893608.1 dihydrolipoyl dehydrogenase -
  OCV11_RS14110 aceF 3103030..3104910 (-) 1881 WP_261893610.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23502.80 Da        Isoelectric Point: 5.5974

>NTDB_id=89257 OCV11_RS14100 WP_261893607.1 3100629..3101246(+) (hapR) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MDASIEKRPRTRLSPQKRKHQLMEIALEVFAKRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDDVLTFVVRQFSNFL
TDSIDLDLPARQNLLTISDGIVNLAIDDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQMLLKNMFAKAIERGELSSDYDA
EDMATLFHGICYSLFVQANRVRNESSVHKLVSHYLDMLCIYNEVA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=89257 OCV11_RS14100 WP_261893607.1 3100629..3101246(+) (hapR) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATGGATGCTTCAATAGAAAAACGCCCAAGAACCCGTTTATCACCTCAAAAACGTAAACACCAGCTAATGGAAATAGCTTT
AGAAGTGTTTGCCAAACGTGGGATTGGTCGTGGTGGTCACGCAGATATTGCGGATATCGCGCAAGTTTCAGTGGCAACAG
TATTTAACTATTTCCCTACTCGTGAAGATTTAGTAGATGACGTACTCACATTTGTTGTTCGTCAATTCTCAAACTTCCTA
ACCGACAGTATCGATCTCGATCTACCTGCTCGCCAAAACTTGTTGACTATCTCAGATGGTATCGTCAACTTAGCGATTGA
TGATTGTCACTGGCTAAAAGTATGGTTCGAATGGAGTGCTTCAACTCGTGATGAAGTATGGCCTCTATTTGTATCGACTA
ACCGTACTAACCAGATGTTACTTAAAAACATGTTTGCAAAAGCAATCGAACGCGGTGAACTTAGCAGCGATTACGACGCA
GAAGATATGGCAACCTTGTTCCACGGTATTTGTTACTCCCTTTTCGTACAAGCTAACCGTGTCCGCAATGAAAGCAGTGT
TCACAAACTAGTGAGCCACTACCTTGACATGCTATGCATCTATAACGAAGTAGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

77.114

98.049

0.756
  hapR Vibrio cholerae strain A1552

77.114

98.049

0.756
  opaR Vibrio parahaemolyticus RIMD 2210633

76.382

97.073

0.741

Multiple sequence alignment