Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV11_RS11970 Genome accession   NZ_AP024895
Coordinates   2618159..2619568 (-) Length   469 a.a.
NCBI ID   WP_261893081.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2613159..2624568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS11930 - 2613244..2613660 (-) 417 WP_261893074.1 CBS domain-containing protein -
  OCV11_RS11935 moaE 2613836..2614288 (-) 453 WP_261893075.1 molybdopterin synthase catalytic subunit MoaE -
  OCV11_RS11940 moaD 2614290..2614535 (-) 246 WP_261893076.1 molybdopterin synthase sulfur carrier subunit -
  OCV11_RS11945 moaC 2614532..2615011 (-) 480 WP_261893077.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV11_RS11950 moaB 2615024..2615530 (-) 507 WP_261893078.1 molybdenum cofactor biosynthesis protein B -
  OCV11_RS11955 moaA 2615637..2616626 (-) 990 WP_261893079.1 GTP 3',8-cyclase MoaA -
  OCV11_RS11960 - 2616935..2617822 (+) 888 WP_261896291.1 YvcK family protein -
  OCV11_RS11965 luxU 2617814..2618152 (-) 339 WP_261893080.1 quorum-sensing phosphorelay protein LuxU -
  OCV11_RS11970 luxO 2618159..2619568 (-) 1410 WP_261893081.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV11_RS11975 uvrB 2619849..2621879 (-) 2031 WP_261893083.1 excinuclease ABC subunit UvrB -
  OCV11_RS11985 rsxA 2622972..2623553 (+) 582 WP_261893085.1 electron transport complex subunit RsxA -
  OCV11_RS11990 rsxB 2623553..2624140 (+) 588 WP_261893086.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52354.97 Da        Isoelectric Point: 6.0435

>NTDB_id=89255 OCV11_RS11970 WP_261893081.1 2618159..2619568(-) (luxO) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MQLEYPTQKAKYLLMVEDTASVAALYRSYLLPLEIDIKVVGTGREAIESIAQREPDLILLDLRLPDMTGMDVLHAVKLKH
PDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNETDDPGNQNYQGFIGSSQTMQAVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAEAADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLHAEVVERFKHYGWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNRPIEPRA
EVVTESNERGPVSVHDIFPLWLTEKQAIEKAIEACEGNIPKAAGYLDVSPSTIYRKLQSWNEKEKEKEK

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=89255 OCV11_RS11970 WP_261893081.1 2618159..2619568(-) (luxO) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATGCAATTAGAATACCCAACTCAAAAAGCAAAATATCTGCTCATGGTTGAGGATACCGCGTCGGTGGCGGCGCTATACCG
TTCCTATCTATTGCCTTTGGAAATTGATATCAAGGTAGTTGGGACCGGACGAGAGGCCATCGAAAGTATTGCTCAACGAG
AGCCGGATCTGATTCTACTTGATCTGCGTTTACCAGATATGACTGGTATGGATGTATTGCACGCAGTGAAACTCAAGCAT
CCTGATGTCCCTGTCGTGTTCATGACAGCACACGGTTCGATTGATACTGCTGTGGAAGCAATGCGTCATGGTGCACAAGA
TTTCCTCATTAAACCCTGCGAAGCGGACCGCTTGCGTGTCACGGTCAATAATGCCATTCGCAAGGCAAGCAAATTAAAAA
ATGAAACTGATGACCCTGGTAACCAAAATTATCAAGGTTTTATCGGTAGTAGTCAGACTATGCAGGCGGTGTATCGCACG
ATTGACTCAGCAGCAACCAGTAAGGCGAGTATTTTTATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCTGAAGC
TATTCATGCGGCGAGTAAACGTGGTGATAAACCGTTTATTGCGATTAACTGTGCTGCAATCCCGAAAGATTTGATCGAAA
GTGAGCTGTTTGGTCACGTGAAAGGGGCGTTTACTGGCGCAGCAACGGATCGCCAAGGGGCAGCCGAAGCCGCAGATGGT
GGCACGTTGTTCTTGGATGAATTGTGTGAAATGGATTTGGATCTACAAACCAAATTATTACGCTTTATCCAAACAGGTAC
CTTCCAAAAAGTAGGTTCGTCCAAAATGAAGAGCGTCGATGTCCGCTTTGTCTGTGCAACGAACCGTGATCCTTGGAAAG
AGGTACAGGAAGGTCGTTTTCGTGAGGACTTGTATTACCGTTTGTACGTCATCCCATTGCATTTGCCACCACTGCGCGAA
CGTGGTGATGATGTGATTGAAATCGCTTACTCACTGCTGGGCTTTATGTCAAAAGAAGAGGGTAAAGGTTTTGTTCGTCT
GCATGCTGAAGTGGTAGAGCGTTTTAAACACTATGGATGGCCAGGTAACGTACGCCAGTTGCAAAACGTGTTGCGTAACG
TCGTTGTGCTCAACGAAGGACGTGAAATTACCCTCAATATGTTACCACCGCCATTAAACCGCCCAATTGAACCTCGTGCT
GAGGTAGTGACCGAAAGCAATGAGCGTGGTCCGGTGTCAGTGCATGACATTTTCCCTTTGTGGTTAACTGAAAAACAAGC
CATCGAAAAAGCCATTGAAGCTTGTGAAGGCAATATTCCTAAAGCAGCTGGGTATTTGGATGTGAGCCCATCTACCATTT
ATCGTAAGTTGCAAAGTTGGAACGAAAAAGAAAAAGAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.262

95.309

0.851
  pilR Pseudomonas aeruginosa PAK

39.111

95.949

0.375

Multiple sequence alignment