Detailed information NTG0089244

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCV11_RS02635
• Genome accession: NZ_AP024895
• Coordinates: 558831..559841 (+)
• Length: 336 a.a.
• NCBI ID: WP_261894834.1
• Uniprot ID: -
• Organism: Vibrio porteresiae DSM 19223 strain MSSRF30
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 553831..564841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV11_RS02600	ftsB	553941..554222 (+)	282	WP_261894823.1	cell division protein FtsB	-
OCV11_RS02605	ispD	554222..554923 (+)	702	WP_261894825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCV11_RS02610	ispF	554920..555396 (+)	477	WP_261894827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCV11_RS02615	truD	555416..556462 (+)	1047	WP_261894829.1	tRNA pseudouridine(13) synthase TruD	-
OCV11_RS02620	surE	556470..557210 (+)	741	WP_373332813.1	5'/3'-nucleotidase SurE	-
OCV11_RS02625	-	557215..557841 (+)	627	WP_261894833.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCV11_RS02630	-	557841..558755 (+)	915	WP_373332801.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCV11_RS02635	rpoS	558831..559841 (+)	1011	WP_261894834.1	RNA polymerase sigma factor RpoS	Regulator
OCV11_RS02640	mutS	559907..562471 (-)	2565	WP_261894835.1	DNA mismatch repair protein MutS	-
OCV11_RS02645	pncC	562556..563041 (+)	486	WP_261894836.1	nicotinamide-nucleotide amidase	-
OCV11_RS02650	recA	563198..564265 (+)	1068	WP_261894837.1	recombinase RecA	Machinery gene
OCV11_RS02655	recX	564329..564793 (+)	465	WP_261894838.1	recombination regulator RecX	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 38671.51 Da
• Isoelectric Point: 4.3563

>NTDB_id=89244 OCV11_RS02635 WP_261894834.1 558831..559841(+) (rpoS) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MSISNTATKVEEFEFDHDVIDSIEVDEELTATSEEDTNDTDSSDDIREEFDVSSKSLDATQMYLSEIGFSPLLTAEEEVL
YARRALRGCEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAL
MNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTAEEIAFELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDII
PDANNSDPEVSTQDDDIRDSLMNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILM
KQGLSMESLFNVEVEM

Nucleotide

• Length: 1011 bp

>NTDB_id=89244 OCV11_RS02635 WP_261894834.1 558831..559841(+) (rpoS) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAATTTGATCATGATGTAATCGATTCCATCGAGGTTGATGA
AGAACTAACGGCAACTAGTGAAGAAGACACTAATGACACGGACAGCAGTGACGATATTCGCGAAGAGTTTGATGTTTCGT
CTAAGAGTTTAGATGCAACACAGATGTATTTGAGCGAAATAGGTTTTTCGCCTTTGTTGACCGCCGAAGAAGAAGTTCTC
TATGCACGCCGCGCTCTGCGTGGTTGTGAAGCCGCAAGAAAACGTATGATCGAAAGTAACTTACGTTTGGTGGTAAAAAT
CTCTCGTCGATATAGCAATCGTGGCCTAGCTCTTCTCGATTTGATAGAAGAAGGCAACCTAGGTTTGATTCGTGCCGTTG
AGAAATTTGACCCAGAACGCGGATTCCGTTTTTCCACTTACGCAACATGGTGGATTCGTCAAACGATTGAACGTGCTTTG
ATGAACCAAACACGTACCATTCGTCTGCCAATTCATGTTGTGAAAGAACTCAATATTTATCTGCGTACTGCACGTGAATT
GTCCCAACGTTTAGACCATGAACCTACAGCAGAAGAGATCGCGTTTGAGCTTGATAAACCGGTTGATGATGTGAGCAAGA
TGCTACGTTTGAATGAACGTATCAGCTCTGTTGACACACCAATTGGTGGAGATGGAGATAAAGCGCTACTGGATATTATT
CCAGATGCGAATAACTCTGACCCAGAGGTTTCAACTCAAGATGATGATATCCGTGATTCTCTGATGAATTGGTTAGATGA
ACTGAATCCAAAACAGAAAGAGGTGTTAGCGCGTCGTTTCGGCCTTCTAGGTTACGAACCATCCACTCTTGAAGAGGTGG
GACGTGAAATTAATCTTACCCGTGAACGTGTTCGTCAAATTCAAGTGGAAGGATTACGCCGTCTAAGAGAGATCCTGATG
AAACAAGGTCTCAGTATGGAATCTCTGTTCAACGTTGAAGTCGAAATGTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (96-165)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (58-88)

• Sigma-70, region 4 (Sigma70_r4) (264-317)

• Sigma-70 region 3 (Sigma70_r3) (176-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.387	99.107	0.866