Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   R0492_RS19045 Genome accession   NZ_CP136649
Coordinates   3625200..3625889 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus licheniformis strain NXU98     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3620200..3630889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS19010 - 3620374..3620850 (-) 477 WP_003185711.1 flagellar protein FlgN -
  R0492_RS19015 flgM 3620869..3621135 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  R0492_RS19020 - 3621215..3621634 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  R0492_RS19025 comFC 3621693..3622427 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  R0492_RS19030 - 3622384..3622668 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  R0492_RS19035 comFA 3622723..3624117 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  R0492_RS19040 - 3624238..3625080 (-) 843 WP_003185726.1 DegV family protein -
  R0492_RS19045 degU 3625200..3625889 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  R0492_RS19050 degS 3625971..3627128 (-) 1158 WP_003185733.1 histidine kinase Regulator
  R0492_RS19055 - 3627342..3627980 (+) 639 WP_003185736.1 YigZ family protein -
  R0492_RS19060 - 3627995..3629071 (+) 1077 WP_003185737.1 LCP family protein -
  R0492_RS19065 - 3629156..3629530 (-) 375 WP_025806150.1 hypothetical protein -
  R0492_RS19070 - 3629650..3630714 (-) 1065 WP_003185739.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=892251 R0492_RS19045 WP_003185730.1 3625200..3625889(-) (degU) [Bacillus licheniformis strain NXU98]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=892251 R0492_RS19045 WP_003185730.1 3625200..3625889(-) (degU) [Bacillus licheniformis strain NXU98]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTTA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGGGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAGGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTCACAAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987