Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   R0492_RS16905 Genome accession   NZ_CP136649
Coordinates   3225317..3225457 (-) Length   46 a.a.
NCBI ID   WP_003184860.1    Uniprot ID   P69890
Organism   Bacillus licheniformis strain NXU98     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220317..3230457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS16885 comP 3220457..3222763 (-) 2307 WP_161658321.1 histidine kinase Regulator
  R0492_RS16890 comX 3222786..3222950 (-) 165 WP_003184853.1 competence pheromone ComX -
  R0492_RS16895 - 3222959..3223840 (-) 882 WP_003184856.1 polyprenyl synthetase family protein -
  R0492_RS16900 - 3224109..3225271 (+) 1163 WP_085959889.1 IS3 family transposase -
  R0492_RS16905 degQ 3225317..3225457 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  R0492_RS16910 - 3225943..3226290 (+) 348 WP_009329512.1 hypothetical protein -
  R0492_RS16915 - 3226333..3227553 (-) 1221 WP_003184864.1 EAL and HDOD domain-containing protein -
  R0492_RS16920 - 3227732..3229201 (-) 1470 WP_003184866.1 nicotinate phosphoribosyltransferase -
  R0492_RS16925 - 3229219..3229770 (-) 552 WP_003184868.1 cysteine hydrolase family protein -
  R0492_RS16930 - 3229955..3230356 (-) 402 WP_003184870.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5747.56 Da        Isoelectric Point: 8.4596

>NTDB_id=892244 R0492_RS16905 WP_003184860.1 3225317..3225457(-) (degQ) [Bacillus licheniformis strain NXU98]
MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTYLKTS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=892244 R0492_RS16905 WP_003184860.1 3225317..3225457(-) (degQ) [Bacillus licheniformis strain NXU98]
GTGGAAAAGCAACAAATTGAAGAATTAAAACAACTGCTTTGGCGGCTAGAGAATGAAATCAGAGAAACAAAGGACTCCTT
GCGCAAGATTAACAAAAGCATTGATCAATACGATAAGTACACATATCTAAAAACCTCGTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P69890

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

71.429

91.304

0.652