Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R0492_RS16880 Genome accession   NZ_CP136649
Coordinates   3219732..3220370 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus licheniformis strain NXU98     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3214732..3225370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS16845 - 3215919..3216350 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  R0492_RS16850 - 3216350..3216691 (+) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  R0492_RS16855 - 3216684..3218162 (+) 1479 WP_003184838.1 Na+/H+ antiporter subunit D -
  R0492_RS16860 - 3218168..3218644 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  R0492_RS16865 - 3218644..3218928 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  R0492_RS16870 mnhG 3218912..3219286 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  R0492_RS16875 - 3219326..3219715 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  R0492_RS16880 comA 3219732..3220370 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  R0492_RS16885 comP 3220457..3222763 (-) 2307 WP_161658321.1 histidine kinase Regulator
  R0492_RS16890 comX 3222786..3222950 (-) 165 WP_003184853.1 competence pheromone ComX -
  R0492_RS16895 - 3222959..3223840 (-) 882 WP_003184856.1 polyprenyl synthetase family protein -
  R0492_RS16900 - 3224109..3225271 (+) 1163 WP_085959889.1 IS3 family transposase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=892242 R0492_RS16880 WP_003184849.1 3219732..3220370(-) (comA) [Bacillus licheniformis strain NXU98]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=892242 R0492_RS16880 WP_003184849.1 3219732..3220370(-) (comA) [Bacillus licheniformis strain NXU98]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778