Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   R0492_RS13345 Genome accession   NZ_CP136649
Coordinates   2564433..2565497 (-) Length   354 a.a.
NCBI ID   WP_003183477.1    Uniprot ID   Q8VQ73
Organism   Bacillus licheniformis strain NXU98     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2559433..2570497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS13300 tapA 2559927..2560655 (-) 729 WP_011198112.1 amyloid fiber anchoring/assembly protein TapA -
  R0492_RS13305 - 2560932..2561252 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  R0492_RS13310 - 2561282..2561464 (-) 183 WP_003183456.1 YqzE family protein -
  R0492_RS13315 comGG 2561553..2561918 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  R0492_RS13320 comGF 2561931..2562419 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  R0492_RS13325 comGE 2562328..2562675 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  R0492_RS13330 comGD 2562659..2563096 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  R0492_RS13335 comGC 2563102..2563395 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  R0492_RS13340 comGB 2563409..2564443 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  R0492_RS13345 comGA 2564433..2565497 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  R0492_RS13350 - 2565654..2566493 (-) 840 WP_003183480.1 STAS domain-containing protein -
  R0492_RS13360 - 2566735..2567112 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  R0492_RS13365 - 2567321..2567566 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  R0492_RS13370 - 2567604..2568242 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  R0492_RS13375 - 2568398..2568571 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  R0492_RS13380 - 2568632..2568946 (-) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -
  R0492_RS13385 - 2568962..2570071 (-) 1110 WP_003183488.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39727.31 Da        Isoelectric Point: 9.1029

>NTDB_id=892230 R0492_RS13345 WP_003183477.1 2564433..2565497(-) (comGA) [Bacillus licheniformis strain NXU98]
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKDGLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINREPVHLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLMLFTGPTGSGKTTTLYSLIDY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLELGVDMTEIEQTLVAVSAQRLVDIVCPFCGDSCTLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC
GGIKTDTLKMLIRKGIALGYLPSKTYERWIGHED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=892230 R0492_RS13345 WP_003183477.1 2564433..2565497(-) (comGA) [Bacillus licheniformis strain NXU98]
TTGTACACGATCGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTACGCTTCAGGATTGATGACGAACTGTTTCAAAAAGACGGATTAACGAGAAATGAGTGCT
CTAGACTCATTTCTCACTTTAAATTTCTTTCTTCGATGGACATTGGCGAGAGACGGCTGCCGCAAAGCGGGGCTTTAACT
CTTTATATCAACCGTGAGCCCGTTCATTTAAGGATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTCCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATGCTTTTCACCGGCCCGACAGGCTCGGGAAAAACGACAACACTCTATTCTTTAATTGACTAC
GCCAAGCGGCATTTTAAGCGAAATATCATTACGTTGGAAGACCCGGTCGAATCAAGAAGCGAAAACATTTTGCAAGTACA
AGTGAACGAAAAAGCGGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTGCGCCACGATCCGGACATGATCATCCTAG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACGGGACACCTTGTTCTATCGAGCATGCAT
GCGAAAAATGCTAAAGGTGCGATATACAGGCTGCTCGAGCTCGGCGTTGATATGACAGAAATTGAACAAACATTGGTCGC
AGTCAGCGCCCAGCGTCTTGTCGATATCGTCTGTCCGTTTTGCGGCGACAGCTGCACTTTGTATTGCAGATTGTCGAGAC
CAGTTAGAAGAGCAAGCGTCTTTGAACTTTTGTACGGAAAAAGCCTTAATCTCTGCATCGAAGAAGCAAAAGGCAGATGC
GGTGGCATCAAAACAGACACCTTAAAAATGCTGATCCGCAAGGGAATAGCACTCGGATATCTGCCGTCGAAAACTTATGA
ACGCTGGATAGGCCATGAAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

66.949

100

0.669