Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   R0492_RS13340 Genome accession   NZ_CP136649
Coordinates   2563409..2564443 (-) Length   344 a.a.
NCBI ID   WP_011198115.1    Uniprot ID   -
Organism   Bacillus licheniformis strain NXU98     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2558409..2569443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS13290 tasA 2558478..2559272 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  R0492_RS13295 sipW 2559346..2559930 (-) 585 WP_003183449.1 signal peptidase I SipW -
  R0492_RS13300 tapA 2559927..2560655 (-) 729 WP_011198112.1 amyloid fiber anchoring/assembly protein TapA -
  R0492_RS13305 - 2560932..2561252 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  R0492_RS13310 - 2561282..2561464 (-) 183 WP_003183456.1 YqzE family protein -
  R0492_RS13315 comGG 2561553..2561918 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  R0492_RS13320 comGF 2561931..2562419 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  R0492_RS13325 comGE 2562328..2562675 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  R0492_RS13330 comGD 2562659..2563096 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  R0492_RS13335 comGC 2563102..2563395 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  R0492_RS13340 comGB 2563409..2564443 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  R0492_RS13345 comGA 2564433..2565497 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  R0492_RS13350 - 2565654..2566493 (-) 840 WP_003183480.1 STAS domain-containing protein -
  R0492_RS13360 - 2566735..2567112 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  R0492_RS13365 - 2567321..2567566 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  R0492_RS13370 - 2567604..2568242 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  R0492_RS13375 - 2568398..2568571 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  R0492_RS13380 - 2568632..2568946 (-) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39737.95 Da        Isoelectric Point: 9.3543

>NTDB_id=892229 R0492_RS13340 WP_011198115.1 2563409..2564443(-) (comGB) [Bacillus licheniformis strain NXU98]
MKIKMKWPVREQADLLKKLGDMMQSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGCPVFQVLEMISFHKDAVTIVYF
AEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPLFLVLTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVFD
HFYLFFAGLPLVAAALSLYYLCSFRHKPPEDKMAFLITIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LRFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=892229 R0492_RS13340 WP_011198115.1 2563409..2564443(-) (comGB) [Bacillus licheniformis strain NXU98]
ATGAAGATTAAAATGAAGTGGCCTGTCCGGGAACAGGCGGACCTTCTGAAAAAACTAGGAGACATGATGCAGAGTGGCTA
TACGATTTTGGATGCTTTAAGTATGCTGAAATTGCAATTGAATGAAAGACGAAGAGCGGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGTGTCCTGTGTTTCAAGTTCTTGAAATGATTTCCTTTCACAAGGATGCTGTCACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATTTGCCTTTAGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAAGCGAAAA
ATTAAAGAAAGCCGCCAGATACCCCTTGTTTTTAGTTTTAACGGTCTGCGTCATCATCTCTATTATGAAATCAGCAATAG
TTCCGCAATTTTCCGCCATCTATGAATCGATGAACGTTGAAACGTCTTTTGCAACGACTCTCATCTTTTATGTTTTCGAT
CACTTTTATCTTTTTTTCGCGGGACTGCCGCTGGTTGCCGCAGCTCTATCCCTCTATTATCTGTGTTCATTCCGCCATAA
ACCTCCAGAAGACAAAATGGCCTTTCTCATTACAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGCTATTTTT
TATCGCTCCAGCTGAGCAATCTTTTGCAAGCGGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTACGATTTCATAAAAATGAAGCGAAGCGCTTGATCGAGCGGCTGAAACAGGGGGAGAGTCTGGAGCAGATGCTGGCCGG
ACATCCGTTTTATGAAAATGATTTAGCAAAGGCTGTTGCACACGGCCAACTAAATGGGCACTTATACAGAGAGCTGTATT
CATATAGTCAGTTTTTGATTGAGCGGCTTGAAAGAAAGGCCGAAAAATGGACAGGCCTGATCCAGCCATTGATTTACGGG
CTAACCGCGGCGATGATATTAATTCTTTATTTGTCCATGCTTTTGCCAATGTATCAAATGATGAACCAGCTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.656

93.895

0.532