Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV04_RS12435 Genome accession   NZ_AP024893
Coordinates   2700754..2701362 (+) Length   202 a.a.
NCBI ID   WP_102940976.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2695754..2706362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS12410 panC 2696246..2697112 (+) 867 WP_171138251.1 pantoate--beta-alanine ligase -
  OCV04_RS12415 - 2697226..2697996 (-) 771 WP_171138252.1 ABC transporter permease -
  OCV04_RS12420 - 2698006..2698917 (-) 912 WP_171138253.1 ABC transporter ATP-binding protein -
  OCV04_RS12425 can 2699170..2699838 (+) 669 WP_102940978.1 carbonate dehydratase -
  OCV04_RS12430 hpt 2699911..2700441 (-) 531 WP_102940977.1 hypoxanthine phosphoribosyltransferase -
  OCV04_RS12435 opaR 2700754..2701362 (+) 609 WP_102940976.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV04_RS12440 lpdA 2701444..2702868 (-) 1425 WP_102940975.1 dihydrolipoyl dehydrogenase -
  OCV04_RS12445 aceF 2703114..2704994 (-) 1881 WP_102940974.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23564.02 Da        Isoelectric Point: 5.1364

>NTDB_id=89221 OCV04_RS12435 WP_102940976.1 2700754..2701362(+) (opaR) [Vibrio plantisponsor strain CECT 7581]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLTHVVRQFSNFL
TDNIDLDLPAKENLSNITKELVEISYQDCYWLKVWFEWSASTRDEVWPLFMSTNRTNQMLVKNIFCKAIERGEVCDKHDP
EELTMLFHGLCYSLFVQANRVEDKESINQLANTYMDMLCIYK

Nucleotide


Download         Length: 609 bp        

>NTDB_id=89221 OCV04_RS12435 WP_102940976.1 2700754..2701362(+) (opaR) [Vibrio plantisponsor strain CECT 7581]
ATGGACGCATCGATTGAGAAACGCCCGAGAACTAGGCTATCTCCCCAGAAACGTAAACTTCAACTTATGGAAATCGCGCT
AGAGGTTTTCGCCAGACGCGGCATTGGTCGTGGCGGACATGCTGATATCGCTGAAATTGCTCAAGTGTCAGTAGCTACGG
TATTTAACTACTTCCCTACTCGTGAAGACTTGGTGGATGAAGTTCTTACTCACGTGGTACGTCAATTCTCTAACTTCTTA
ACCGATAACATTGATTTAGACTTACCAGCCAAAGAAAACCTAAGCAACATCACCAAAGAGCTAGTGGAAATCAGCTATCA
GGATTGCTACTGGCTAAAAGTATGGTTTGAATGGAGTGCTTCAACTCGTGATGAAGTATGGCCACTCTTTATGTCGACCA
ACCGAACCAATCAAATGCTAGTGAAGAACATCTTCTGCAAAGCGATTGAACGTGGTGAAGTGTGCGATAAGCATGATCCA
GAAGAACTAACTATGCTGTTCCACGGTCTTTGCTACTCATTGTTTGTTCAGGCAAACCGAGTGGAAGACAAAGAGAGCAT
CAACCAGTTAGCGAACACCTACATGGATATGTTGTGTATCTATAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

78.788

98.02

0.772
  hapR Vibrio cholerae C6706

74.257

100

0.743
  hapR Vibrio cholerae strain A1552

74.257

100

0.743

Multiple sequence alignment