Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAC934_RS17005 Genome accession   NZ_CP152362
Coordinates   3286692..3287327 (-) Length   211 a.a.
NCBI ID   WP_264239929.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3281692..3292327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS16985 (AAC934_16985) yvzF 3282749..3282934 (-) 186 WP_003221676.1 YvzF family protein -
  AAC934_RS16990 (AAC934_16990) gerAA 3283052..3284500 (+) 1449 WP_038429601.1 spore germination receptor protein GerAA -
  AAC934_RS16995 (AAC934_16995) gerAB 3284469..3285566 (+) 1098 WP_029318427.1 spore germination receptor protein GerAB -
  AAC934_RS17000 (AAC934_17000) gerAC 3285563..3286684 (+) 1122 WP_342623648.1 spore germination receptor protein GerAC -
  AAC934_RS17005 (AAC934_17005) vraR 3286692..3287327 (-) 636 WP_264239929.1 two-component system response regulator LiaR Regulator
  AAC934_RS17010 (AAC934_17010) liaS 3287305..3288387 (-) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  AAC934_RS17015 (AAC934_17015) liaF 3288384..3289109 (-) 726 WP_003242605.1 LiaRS two-component regulatory system accessory protein LiaF -
  AAC934_RS17020 (AAC934_17020) liaG 3289143..3290015 (-) 873 WP_003244420.1 DUF4097 domain-containing protein -
  AAC934_RS17025 (AAC934_17025) liaH 3290117..3290794 (-) 678 WP_247470775.1 PspA/IM30 family protein -
  AAC934_RS17030 (AAC934_17030) liaI 3290821..3291201 (-) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23109.79 Da        Isoelectric Point: 5.1763

>NTDB_id=892168 AAC934_RS17005 WP_264239929.1 3286692..3287327(-) (vraR) [Bacillus subtilis strain LP]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=892168 AAC934_RS17005 WP_264239929.1 3286692..3287327(-) (vraR) [Bacillus subtilis strain LP]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGTTGCGCCACTCAGGTGAAAACGCGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACATCGAAATCATCTCGTCAAATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.403