Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AAC934_RS09080 Genome accession   NZ_CP152362
Coordinates   1738283..1738714 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain LP     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1733283..1743714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS09060 (AAC934_09060) spoVS 1733844..1734104 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  AAC934_RS09065 (AAC934_09065) tdh 1734370..1735413 (+) 1044 WP_033883737.1 L-threonine 3-dehydrogenase -
  AAC934_RS09070 (AAC934_09070) kbl 1735426..1736604 (+) 1179 WP_033883739.1 glycine C-acetyltransferase -
  AAC934_RS09075 (AAC934_09075) miaB 1736752..1738281 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AAC934_RS09080 (AAC934_09080) ymcA 1738283..1738714 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AAC934_RS09085 (AAC934_09085) cotE 1738976..1739521 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  AAC934_RS09090 (AAC934_09090) hexA 1739654..1742230 (+) 2577 WP_033883742.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=892117 AAC934_RS09080 WP_003231834.1 1738283..1738714(+) (ymcA) [Bacillus subtilis strain LP]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=892117 AAC934_RS09080 WP_003231834.1 1738283..1738714(+) (ymcA) [Bacillus subtilis strain LP]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1