Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R0513_RS02950 Genome accession   NZ_CP136638
Coordinates   557534..558184 (-) Length   216 a.a.
NCBI ID   WP_002874218.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S2-20     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 552534..563184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS02915 (R0513_02915) - 552912..553916 (+) 1005 WP_079254730.1 hypothetical protein -
  R0513_RS02920 (R0513_02920) tlyA 553913..554674 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  R0513_RS02925 (R0513_02925) ribF 554640..555494 (+) 855 WP_002852206.1 bifunctional riboflavin kinase/FAD synthetase -
  R0513_RS02930 (R0513_02930) cmoA 555481..556191 (+) 711 WP_079254426.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R0513_RS02935 (R0513_02935) - 556181..556402 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R0513_RS02940 (R0513_02940) - 556399..556833 (-) 435 WP_002868091.1 EexN family lipoprotein -
  R0513_RS02945 (R0513_02945) - 556891..557523 (-) 633 WP_002874216.1 trimeric intracellular cation channel family protein -
  R0513_RS02950 (R0513_02950) CJE0566 557534..558184 (-) 651 WP_002874218.1 DNA/RNA non-specific endonuclease Regulator
  R0513_RS02955 (R0513_02955) nth 558181..558807 (-) 627 WP_002852225.1 endonuclease III -
  R0513_RS02960 (R0513_02960) peb4 558891..559712 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  R0513_RS02965 (R0513_02965) fbaA 559712..560776 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  R0513_RS02970 (R0513_02970) - 560871..562313 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.09 Da        Isoelectric Point: 9.5529

>NTDB_id=892077 R0513_RS02950 WP_002874218.1 557534..558184(-) (CJE0566) [Campylobacter jejuni strain S2-20]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=892077 R0513_RS02950 WP_002874218.1 557534..558184(-) (CJE0566) [Campylobacter jejuni strain S2-20]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATATATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634