Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAC934_RS05070 Genome accession   NZ_CP152362
Coordinates   976696..977343 (+) Length   215 a.a.
NCBI ID   WP_024573282.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 971696..982343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS05055 (AAC934_05055) glpD 971867..973534 (+) 1668 WP_041338128.1 glycerol-3-phosphate dehydrogenase -
  AAC934_RS05060 (AAC934_05060) pgcA 973666..975411 (+) 1746 WP_217024251.1 phosphoglucomutase -
  AAC934_RS05065 (AAC934_05065) yhcY 975560..976699 (+) 1140 WP_038428673.1 two-component system sensor histidine kinase YhcY -
  AAC934_RS05070 (AAC934_05070) vraR 976696..977343 (+) 648 WP_024573282.1 two-component system response regulator YhcZ Regulator
  AAC934_RS05075 (AAC934_05075) yhdA 977340..977864 (+) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  AAC934_RS05080 (AAC934_05080) yhdB 977879..978121 (-) 243 WP_003233373.1 YhdB family protein -
  AAC934_RS05085 (AAC934_05085) yhdC 978322..978645 (+) 324 WP_003233371.1 YqzG/YhdC family protein -
  AAC934_RS05090 (AAC934_05090) lytF 978687..980153 (-) 1467 WP_015252477.1 peptidoglycan endopeptidase LytF -
  AAC934_RS05095 (AAC934_05095) nsrR 980306..980746 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24150.76 Da        Isoelectric Point: 6.0922

>NTDB_id=892074 AAC934_RS05070 WP_024573282.1 976696..977343(+) (vraR) [Bacillus subtilis strain LP]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETDIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=892074 AAC934_RS05070 WP_024573282.1 976696..977343(+) (vraR) [Bacillus subtilis strain LP]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATT
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGGATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.865

100

0.414