Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RAS18_RS15735 Genome accession   NZ_CP136635
Coordinates   3132211..3132852 (-) Length   213 a.a.
NCBI ID   WP_061570552.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3127211..3137852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS15700 - 3128404..3128835 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  RAS18_RS15705 - 3128835..3129176 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  RAS18_RS15710 - 3129169..3130650 (+) 1482 WP_061570547.1 Na+/H+ antiporter subunit D -
  RAS18_RS15715 - 3130656..3131132 (+) 477 WP_406620827.1 Na+/H+ antiporter subunit E -
  RAS18_RS15720 - 3131132..3131416 (+) 285 WP_061570549.1 Na(+)/H(+) antiporter subunit F1 -
  RAS18_RS15725 mnhG 3131400..3131774 (+) 375 WP_061570550.1 monovalent cation/H(+) antiporter subunit G -
  RAS18_RS15730 - 3131813..3132193 (-) 381 WP_061570551.1 hotdog fold thioesterase -
  RAS18_RS15735 comA 3132211..3132852 (-) 642 WP_061570552.1 response regulator transcription factor Regulator
  RAS18_RS15740 - 3132933..3135246 (-) 2314 Protein_3042 ATP-binding protein -
  RAS18_RS15745 comX 3135262..3135483 (-) 222 WP_063637894.1 competence pheromone ComX -
  RAS18_RS15750 - 3135480..3136349 (-) 870 WP_063638377.1 polyprenyl synthetase family protein -
  RAS18_RS15755 degQ 3136533..3136676 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  RAS18_RS15760 - 3137136..3137495 (+) 360 WP_061570555.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23960.30 Da        Isoelectric Point: 4.7742

>NTDB_id=892057 RAS18_RS15735 WP_061570552.1 3132211..3132852(-) (comA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=892057 RAS18_RS15735 WP_061570552.1 3132211..3132852(-) (comA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATTCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTCGTTCATAATCATGATTTTGCAGCTTATGATCTCATCCTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATATTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCGGGGCTGCACGGCGCGATCAGCAAAACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTTCTCAATGATGAAATCTTAGTGGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCGGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGCCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATTTGAGCAAACGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAATGTCGGTTCCCGGACGGAAGCGGTGCTGATCGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

90.187

100

0.906