Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RAS18_RS12900 Genome accession   NZ_CP136635
Coordinates   2585229..2585852 (-) Length   207 a.a.
NCBI ID   WP_406620658.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2580229..2590852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS12870 rpsT 2580523..2580789 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  RAS18_RS12875 holA 2580804..2581847 (-) 1044 WP_010789253.1 DNA polymerase III subunit delta -
  RAS18_RS12880 - 2581887..2582036 (-) 150 WP_010789254.1 hypothetical protein -
  RAS18_RS12885 - 2582077..2582211 (+) 135 WP_003229983.1 YqzM family protein -
  RAS18_RS12890 comEC 2582252..2584585 (-) 2334 WP_406620657.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RAS18_RS12895 - 2584592..2585161 (-) 570 WP_003325392.1 ComE operon protein 2 -
  RAS18_RS12900 comEA 2585229..2585852 (-) 624 WP_406620658.1 helix-hairpin-helix domain-containing protein Machinery gene
  RAS18_RS12905 comER 2585936..2586757 (+) 822 WP_406620659.1 late competence protein ComER -
  RAS18_RS12910 - 2586827..2587567 (-) 741 WP_406620660.1 class I SAM-dependent methyltransferase -
  RAS18_RS12915 rsfS 2587564..2587920 (-) 357 WP_003325387.1 ribosome silencing factor -
  RAS18_RS12920 yqeK 2587937..2588497 (-) 561 WP_061572766.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RAS18_RS12925 - 2588487..2589056 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  RAS18_RS12930 yhbY 2589068..2589358 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -
  RAS18_RS12935 aroE 2589352..2590194 (-) 843 WP_061572764.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21938.68 Da        Isoelectric Point: 4.6181

>NTDB_id=892047 RAS18_RS12900 WP_406620658.1 2585229..2585852(-) (comEA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MNWFYQHKKIILTAGAAVIFIVILLIFPGAKKQEPAQQITASPDTAGTQVQQQESKGDADGEKIIIDIKGAVKHPGVYEL
KTGDRVSQAIEKAGGINSEADEKQVNLAELLQDGTVVYIPSEGEESTQSASANASVQNGAGKEALVNINTASLEELQAIS
GVGPSKAEAIIAYREENGKFQAVEDITNVSGIGEKSFEKIKSAITVK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=892047 RAS18_RS12900 WP_406620658.1 2585229..2585852(-) (comEA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGAATTGGTTTTACCAGCACAAAAAAATAATCTTAACGGCAGGTGCTGCTGTCATCTTCATCGTCATCCTGCTTATTTT
TCCCGGCGCAAAGAAGCAGGAGCCTGCTCAGCAAATCACAGCGTCGCCTGACACGGCGGGCACACAAGTTCAGCAGCAAG
AATCGAAAGGTGATGCTGACGGAGAAAAAATTATCATTGATATTAAAGGCGCTGTCAAACATCCGGGTGTTTACGAATTG
AAAACGGGAGACAGAGTTTCACAGGCTATCGAAAAAGCGGGAGGCATTAATTCAGAGGCTGATGAAAAACAAGTAAATTT
AGCTGAACTCCTGCAGGACGGCACTGTCGTGTACATTCCAAGTGAGGGGGAAGAGTCAACACAAAGCGCTAGCGCAAATG
CTTCTGTGCAAAACGGAGCAGGAAAAGAGGCTTTGGTTAATATCAATACAGCGTCATTAGAGGAACTGCAGGCTATTTCC
GGGGTCGGTCCGTCAAAAGCAGAAGCTATAATAGCTTATCGTGAAGAAAACGGAAAATTTCAAGCCGTTGAAGACATTAC
AAATGTCTCGGGAATCGGCGAAAAATCATTTGAGAAAATAAAATCAGCCATCACAGTTAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(66-120)

Helix-hairpin-helix motif (HHH_3)

(143-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

65.217

100

0.652