Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   RAS18_RS12460 Genome accession   NZ_CP136635
Coordinates   2504075..2505145 (-) Length   356 a.a.
NCBI ID   WP_106044145.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2499075..2510145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS12415 tapA 2499610..2500311 (-) 702 WP_406620639.1 amyloid fiber anchoring/assembly protein TapA -
  RAS18_RS12420 - 2500573..2500896 (+) 324 WP_106044151.1 DUF3889 domain-containing protein -
  RAS18_RS12425 - 2500943..2501122 (-) 180 WP_061572829.1 YqzE family protein -
  RAS18_RS12430 comGG 2501192..2501566 (-) 375 WP_106044150.1 competence type IV pilus minor pilin ComGG Machinery gene
  RAS18_RS12435 comGF 2501567..2501962 (-) 396 WP_406622006.1 competence type IV pilus minor pilin ComGF Machinery gene
  RAS18_RS12440 comGE 2501976..2502323 (-) 348 WP_106044149.1 competence type IV pilus minor pilin ComGE Machinery gene
  RAS18_RS12445 comGD 2502307..2502747 (-) 441 WP_106044148.1 competence type IV pilus minor pilin ComGD Machinery gene
  RAS18_RS12450 comGC 2502737..2503036 (-) 300 WP_275592182.1 competence type IV pilus major pilin ComGC Machinery gene
  RAS18_RS12455 comGB 2503051..2504088 (-) 1038 WP_106044146.1 competence type IV pilus assembly protein ComGB Machinery gene
  RAS18_RS12460 comGA 2504075..2505145 (-) 1071 WP_106044145.1 competence type IV pilus ATPase ComGA Machinery gene
  RAS18_RS12465 - 2505544..2506497 (-) 954 WP_061572822.1 magnesium transporter CorA family protein -
  RAS18_RS12470 - 2506619..2507967 (+) 1349 Protein_2416 hemolysin family protein -
  RAS18_RS12475 - 2508034..2508885 (-) 852 WP_406620640.1 STAS domain-containing protein -
  RAS18_RS12485 - 2509152..2509532 (-) 381 WP_003325422.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  RAS18_RS12490 - 2509770..2510015 (+) 246 WP_003325421.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40427.73 Da        Isoelectric Point: 9.4624

>NTDB_id=892043 RAS18_RS12460 WP_106044145.1 2504075..2505145(-) (comGA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MDTIEKTSRTLIEEAYSVKASDIHIVPREQDALIHFRIDHALLKKRTMKKEECVRLISHFKFLSAMDIGERRKPQSGSLS
LKLKKGTVYLRMSTLPTINDESLVIRVLPQHNIPAIERLSLFPKTGATLLSFLKHSHGLIIFTGPTGSGKSTTLYSLVQY
AKKHFNRNIITLEDPVETRDQDVLQVQVNEKAGITYSAGLKAILRHDPDMIVLGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGVNMNEIEQTAIAIAAQRLVDLACPFCENGCSSVYCRLTRDVRRATIYELLYGKNLQQCIQEARGE
RANYQYRTLRQIIRKGIALGYLTTNNYDRWVYHEED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=892043 RAS18_RS12460 WP_106044145.1 2504075..2505145(-) (comGA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
TTGGATACGATAGAAAAAACTAGCAGAACGTTAATTGAAGAGGCATATTCCGTGAAGGCCTCGGATATTCACATTGTACC
AAGGGAGCAAGATGCTTTGATCCATTTTCGGATTGACCATGCGTTGCTGAAGAAGCGGACAATGAAAAAGGAAGAGTGCG
TTCGCCTCATTTCCCATTTTAAATTTCTGTCAGCCATGGATATAGGAGAAAGGCGGAAGCCGCAAAGTGGTTCACTTTCT
TTAAAGCTTAAAAAAGGGACAGTTTATCTCAGAATGTCGACACTTCCTACGATTAATGATGAAAGCCTCGTGATCAGAGT
TTTGCCTCAGCATAATATTCCTGCGATCGAAAGACTGTCCCTGTTCCCAAAGACAGGCGCTACGCTGCTATCCTTTTTAA
AGCACTCCCACGGCCTCATTATTTTTACCGGTCCGACTGGCTCAGGGAAATCTACCACCCTATATTCGCTGGTTCAATAT
GCAAAAAAGCATTTCAACCGAAATATTATCACTCTCGAAGATCCTGTGGAAACTAGAGATCAGGATGTCTTGCAGGTACA
GGTGAATGAAAAAGCCGGCATTACGTACTCAGCGGGCCTAAAGGCGATCTTGCGCCATGATCCAGACATGATTGTGCTGG
GGGAAATCAGGGATGCTGAAACAGCAAAAATTGCCGTGCGGGCTGCTATGACAGGCCATTTGGTATTAACAAGCCTGCAC
ACAAGAGATGCCAAGGGCGCCATTTACAGACTGCTTGAATTCGGAGTAAATATGAACGAAATAGAGCAAACAGCGATTGC
TATAGCAGCCCAGCGATTAGTCGACTTAGCCTGTCCATTTTGTGAAAACGGCTGTTCCTCTGTTTATTGCCGGCTTACAC
GTGATGTAAGGCGAGCGACCATTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATACAAGAAGCTAGAGGAGAA
CGGGCCAATTATCAGTACCGAACCTTACGGCAGATTATCAGAAAAGGAATCGCGCTTGGCTATCTAACGACGAATAATTA
CGACCGGTGGGTTTATCATGAAGAGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

88.202

100

0.882