Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RAS18_RS12210 Genome accession   NZ_CP136635
Coordinates   2465435..2467165 (-) Length   576 a.a.
NCBI ID   WP_106044169.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2460435..2472165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS12190 - 2460573..2461691 (+) 1119 WP_406620629.1 NADH-dependent flavin oxidoreductase -
  RAS18_RS12195 - 2461858..2462715 (+) 858 WP_003325485.1 manganese catalase family protein -
  RAS18_RS12200 spo0A 2462881..2463678 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  RAS18_RS12205 spoIVB 2463960..2465240 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  RAS18_RS12210 recN 2465435..2467165 (-) 1731 WP_106044169.1 DNA repair protein RecN Machinery gene
  RAS18_RS12215 argR 2467200..2467649 (-) 450 WP_003325480.1 arginine repressor ArgR -
  RAS18_RS12220 - 2467748..2468593 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -
  RAS18_RS12225 dxs 2468590..2470491 (-) 1902 WP_150223195.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RAS18_RS12230 - 2470498..2470674 (-) 177 WP_157883238.1 hypothetical protein -
  RAS18_RS12235 - 2470698..2471588 (-) 891 WP_406620630.1 polyprenyl synthetase family protein -
  RAS18_RS12240 - 2471578..2471832 (-) 255 WP_003325476.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64417.18 Da        Isoelectric Point: 4.7405

>NTDB_id=892034 RAS18_RS12210 WP_106044169.1 2465435..2467165(-) (recN) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HGQGIDVSDDMIVLRRDINSNGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRNE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEASNVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTAPRSEEAPIVNGQPVQLTDQGIDMVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=892034 RAS18_RS12210 WP_106044169.1 2465435..2467165(-) (recN) [Bacillus atrophaeus subsp. globigii strain Hab-5]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCCGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGACGGGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACGAAAGCCGAACTAGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGGACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAATTCCAACGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGAGAAATCGGCAGGCTCTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGTTGTTGGACAAGTTTGCCGGAGAAGAGGCTGACAGTGCGCTCCAT
GCTTATCGGGAAGGCTATCAGCGTTACATGAAGGTGCTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCATCGGCTGGATTTAATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTTTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAATGCGCTTCGCAATGAG
CAGGGAGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCCGACATCAATGAACCGCTGCAAAAACT
TTCAGAAAGTGTTTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACAGTA
GAAGACATTTTGGAATACGCTTCAAAAATTGAAGAAGAGATTGACCAAATCCAAAACAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGTTGGACTCTGTCGGTAAAGATGTGGCGGTAGAAGCGTCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCAACATTTGATACTGAATTTCTTATC
AGGACGGCACCGCGCAGTGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATGGT
GAAGTTTTTGATCTCGACCAATACGGGCGAACCGCTAAAACCGCTTTCTAAAGTAGCATCCGGCGGAGAGTTGTCGAGGG
TGATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATCTTTGACGAAGTCGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCCGAAAAGATTCATAAGGTGTCAATGGGATCCCAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCATCTTTTAATTGCGAAAGAATCAAAAGACGGAAGAACAACGACTCATGTCA
CTCCGCTGTCAAAGCAGGAAAAGGTGGCAGAAATCGGAAGGATGATTGCCGGAGTCGAGGTCACCGATCTGACCAAACGG
CATGCGAAAGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.41

100

0.894