Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RAS18_RS12200 Genome accession   NZ_CP136635
Coordinates   2462881..2463678 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2457881..2468678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS12175 - 2458313..2459056 (-) 744 WP_061572860.1 glycerophosphodiester phosphodiesterase -
  RAS18_RS12180 - 2459168..2459791 (-) 624 WP_406620628.1 N-acetylmuramoyl-L-alanine amidase -
  RAS18_RS12185 - 2459814..2460116 (-) 303 WP_150223200.1 hypothetical protein -
  RAS18_RS12190 - 2460573..2461691 (+) 1119 WP_406620629.1 NADH-dependent flavin oxidoreductase -
  RAS18_RS12195 - 2461858..2462715 (+) 858 WP_003325485.1 manganese catalase family protein -
  RAS18_RS12200 spo0A 2462881..2463678 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  RAS18_RS12205 spoIVB 2463960..2465240 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  RAS18_RS12210 recN 2465435..2467165 (-) 1731 WP_106044169.1 DNA repair protein RecN Machinery gene
  RAS18_RS12215 argR 2467200..2467649 (-) 450 WP_003325480.1 arginine repressor ArgR -
  RAS18_RS12220 - 2467748..2468593 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=892033 RAS18_RS12200 WP_010789174.1 2462881..2463678(-) (spo0A) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=892033 RAS18_RS12200 WP_010789174.1 2462881..2463678(-) (spo0A) [Bacillus atrophaeus subsp. globigii strain Hab-5]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGCCTGTCTTTGTTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAACAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATAAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGCATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATTAAAGGGTATCTCTACCTGCGCGAAGCCATCTCAATGGTCTATAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTGCTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGTATG
ACGAAGGCAAAACCTACAAATTCAGAATTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974