Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | OCV27_RS12585 | Genome accession | NZ_AP024889 |
| Coordinates | 2761004..2761609 (+) | Length | 201 a.a. |
| NCBI ID | WP_125319686.1 | Uniprot ID | A0A427U7X7 |
| Organism | Vibrio pectenicida strain LMG 19642 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2756004..2766609
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV27_RS12560 | panC | 2756403..2757305 (+) | 903 | WP_125319733.1 | pantoate--beta-alanine ligase | - |
| OCV27_RS12565 | - | 2757374..2758144 (-) | 771 | WP_125319683.1 | ABC transporter permease | - |
| OCV27_RS12570 | - | 2758146..2759060 (-) | 915 | WP_125319734.1 | ABC transporter ATP-binding protein | - |
| OCV27_RS12575 | can | 2759409..2760068 (+) | 660 | WP_125319684.1 | carbonate dehydratase | - |
| OCV27_RS12580 | hpt | 2760169..2760699 (-) | 531 | WP_125319685.1 | hypoxanthine phosphoribosyltransferase | - |
| OCV27_RS12585 | opaR | 2761004..2761609 (+) | 606 | WP_125319686.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| OCV27_RS12590 | lpdA | 2761732..2763159 (-) | 1428 | WP_125319687.1 | dihydrolipoyl dehydrogenase | - |
| OCV27_RS12595 | aceF | 2763410..2765287 (-) | 1878 | WP_125319688.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23227.46 Da Isoelectric Point: 5.6234
>NTDB_id=89182 OCV27_RS12585 WP_125319686.1 2761004..2761609(+) (opaR) [Vibrio pectenicida strain LMG 19642]
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLVVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDIHDPA
DLATLFHGICYSLFVQANRTQDDDSVNRLTQSYLDMLCIYK
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLVVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDIHDPA
DLATLFHGICYSLFVQANRTQDDDSVNRLTQSYLDMLCIYK
Nucleotide
Download Length: 606 bp
>NTDB_id=89182 OCV27_RS12585 WP_125319686.1 2761004..2761609(+) (opaR) [Vibrio pectenicida strain LMG 19642]
ATGGATTCTATAGCTAAAAGACCGCGTACGCGTCTATCTCCACAAAAACGTAAACAACAACTAATGGAAATCGCATTAGA
GGTGTTCGCTCGTCGTGGTATTGGCCGCGGTGGTCACGCTGACATTGCAGAGATTGCACAAGTTTCTGTTGCAACAGTAT
TTAATTACTTCCCTACCAGAGAAGATTTGGTAGACGATGTATTAAACTACGTTGTACGTCAGTTCTCTAACTTCCTCTCT
GATAACATTGACCTCGACATTCATGCTAAAGAAAACCTTCGCAACCTAACTTCAGCAATGGTTGACTTAGTCGTCAATGA
CTGTCATTGGCTTAAAGTCTGGTTCGAGTGGAGTGCATCAACCCGCGATGAAGTATGGCCATTATTTGTAACAACAAACC
GTACTAACCAACTTCTGGTTCAAAACATGTTTATCAAAGCAATTGAACGAGGCGAAGTCTGTGATATTCATGACCCAGCA
GATTTAGCAACGCTATTCCATGGCATCTGCTACTCATTATTTGTACAAGCAAATCGTACTCAAGATGATGATTCAGTTAA
CCGTTTAACACAAAGCTATCTAGACATGCTTTGTATCTACAAATAA
ATGGATTCTATAGCTAAAAGACCGCGTACGCGTCTATCTCCACAAAAACGTAAACAACAACTAATGGAAATCGCATTAGA
GGTGTTCGCTCGTCGTGGTATTGGCCGCGGTGGTCACGCTGACATTGCAGAGATTGCACAAGTTTCTGTTGCAACAGTAT
TTAATTACTTCCCTACCAGAGAAGATTTGGTAGACGATGTATTAAACTACGTTGTACGTCAGTTCTCTAACTTCCTCTCT
GATAACATTGACCTCGACATTCATGCTAAAGAAAACCTTCGCAACCTAACTTCAGCAATGGTTGACTTAGTCGTCAATGA
CTGTCATTGGCTTAAAGTCTGGTTCGAGTGGAGTGCATCAACCCGCGATGAAGTATGGCCATTATTTGTAACAACAAACC
GTACTAACCAACTTCTGGTTCAAAACATGTTTATCAAAGCAATTGAACGAGGCGAAGTCTGTGATATTCATGACCCAGCA
GATTTAGCAACGCTATTCCATGGCATCTGCTACTCATTATTTGTACAAGCAAATCGTACTCAAGATGATGATTCAGTTAA
CCGTTTAACACAAAGCTATCTAGACATGCTTTGTATCTACAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
85 |
99.502 |
0.846 |
| hapR | Vibrio cholerae C6706 |
75.879 |
99.005 |
0.751 |
| hapR | Vibrio cholerae strain A1552 |
75.879 |
99.005 |
0.751 |