Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AAEU35_RS06855 Genome accession   NZ_CP152294
Coordinates   1392234..1393019 (+) Length   261 a.a.
NCBI ID   WP_021722894.1    Uniprot ID   -
Organism   Lactococcus lactis strain Q13     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1387234..1398019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS06825 - 1387245..1387733 (-) 489 WP_058222948.1 YdeI/OmpD-associated family protein -
  AAEU35_RS06830 - 1387770..1388054 (-) 285 WP_010905114.1 hypothetical protein -
  AAEU35_RS06835 - 1388185..1389738 (-) 1554 WP_003132266.1 ABC-F family ATP-binding cassette domain-containing protein -
  AAEU35_RS06840 - 1389768..1390235 (-) 468 WP_010905112.1 DUF3013 family protein -
  AAEU35_RS06845 - 1390388..1390876 (+) 489 WP_058213361.1 GNAT family N-acetyltransferase -
  AAEU35_RS06850 rarA 1390920..1392179 (+) 1260 WP_058222949.1 replication-associated recombination protein A Machinery gene
  AAEU35_RS06855 spo0J 1392234..1393019 (+) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  AAEU35_RS06860 - 1393069..1394850 (-) 1782 WP_021722893.1 heavy metal translocating P-type ATPase -
  AAEU35_RS06865 rpmF 1395214..1395387 (+) 174 WP_010905107.1 50S ribosomal protein L32 -
  AAEU35_RS06870 rpmG 1395417..1395566 (+) 150 WP_003132258.1 50S ribosomal protein L33 -
  AAEU35_RS06875 - 1396133..1396300 (+) 168 WP_003132257.1 lactococcin family bacteriocin -
  AAEU35_RS06880 - 1396302..1396604 (+) 303 WP_003132256.1 hypothetical protein -
  AAEU35_RS06885 - 1396640..1397230 (-) 591 WP_003132255.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29755.63 Da        Isoelectric Point: 9.5731

>NTDB_id=891815 AAEU35_RS06855 WP_021722894.1 1392234..1393019(+) (spo0J) [Lactococcus lactis strain Q13]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=891815 AAEU35_RS06855 WP_021722894.1 1392234..1393019(+) (spo0J) [Lactococcus lactis strain Q13]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCATTTTGATAATCTTGATGAACTGGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471