Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AAEU35_RS06850 Genome accession   NZ_CP152294
Coordinates   1390920..1392179 (+) Length   419 a.a.
NCBI ID   WP_058222949.1    Uniprot ID   -
Organism   Lactococcus lactis strain Q13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1385920..1397179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS06820 prmA 1386274..1387227 (-) 954 WP_058222947.1 50S ribosomal protein L11 methyltransferase -
  AAEU35_RS06825 - 1387245..1387733 (-) 489 WP_058222948.1 YdeI/OmpD-associated family protein -
  AAEU35_RS06830 - 1387770..1388054 (-) 285 WP_010905114.1 hypothetical protein -
  AAEU35_RS06835 - 1388185..1389738 (-) 1554 WP_003132266.1 ABC-F family ATP-binding cassette domain-containing protein -
  AAEU35_RS06840 - 1389768..1390235 (-) 468 WP_010905112.1 DUF3013 family protein -
  AAEU35_RS06845 - 1390388..1390876 (+) 489 WP_058213361.1 GNAT family N-acetyltransferase -
  AAEU35_RS06850 rarA 1390920..1392179 (+) 1260 WP_058222949.1 replication-associated recombination protein A Machinery gene
  AAEU35_RS06855 spo0J 1392234..1393019 (+) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  AAEU35_RS06860 - 1393069..1394850 (-) 1782 WP_021722893.1 heavy metal translocating P-type ATPase -
  AAEU35_RS06865 rpmF 1395214..1395387 (+) 174 WP_010905107.1 50S ribosomal protein L32 -
  AAEU35_RS06870 rpmG 1395417..1395566 (+) 150 WP_003132258.1 50S ribosomal protein L33 -
  AAEU35_RS06875 - 1396133..1396300 (+) 168 WP_003132257.1 lactococcin family bacteriocin -
  AAEU35_RS06880 - 1396302..1396604 (+) 303 WP_003132256.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46782.08 Da        Isoelectric Point: 5.6008

>NTDB_id=891814 AAEU35_RS06850 WP_058222949.1 1390920..1392179(+) (rarA) [Lactococcus lactis strain Q13]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVD
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=891814 AAEU35_RS06850 WP_058222949.1 1390920..1392179(+) (rarA) [Lactococcus lactis strain Q13]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCTTTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAGAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACTATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.479

100

0.599