Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RY930_RS01890 Genome accession   NZ_CP136589
Coordinates   403913..404500 (-) Length   195 a.a.
NCBI ID   WP_021231635.1    Uniprot ID   -
Organism   Aeromonas veronii strain BIM B-1812     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 398913..409500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY930_RS01865 (RY930_01865) cspA 400220..400432 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  RY930_RS01870 (RY930_01870) yjbD 401028..401312 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  RY930_RS01875 (RY930_01875) - 401459..402361 (-) 903 WP_252413101.1 cation diffusion facilitator family transporter -
  RY930_RS01880 (RY930_01880) - 402823..402948 (+) 126 WP_019445191.1 hypothetical protein -
  RY930_RS01885 (RY930_01885) - 403020..403763 (-) 744 WP_206877654.1 ABC transporter substrate-binding protein -
  RY930_RS01890 (RY930_01890) ssb 403913..404500 (-) 588 WP_021231635.1 single-stranded DNA-binding protein Machinery gene
  RY930_RS01895 (RY930_01895) - 404927..405574 (+) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  RY930_RS01900 (RY930_01900) - 405631..406017 (+) 387 WP_013723429.1 curli production assembly/transport protein CsgE -
  RY930_RS01905 (RY930_01905) - 406029..406430 (+) 402 WP_019445195.1 curli assembly protein CsgF -
  RY930_RS01910 (RY930_01910) - 406438..407277 (+) 840 WP_005355003.1 CsgG/HfaB family protein -
  RY930_RS01915 (RY930_01915) - 407464..407985 (+) 522 WP_263718864.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21493.96 Da        Isoelectric Point: 5.9247

>NTDB_id=891780 RY930_RS01890 WP_021231635.1 403913..404500(-) (ssb) [Aeromonas veronii strain BIM B-1812]
MASRGINKVILIGNLGKDPEVRYMPSGNAVANITLATSETWRDKQTGEQKERTEWHNVSLIGKLAEIAGEYLKKGSQVYV
EGKLQTRKWQDQSGQDRYTTEVLVDSFTGVMQMLGGRSQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=891780 RY930_RS01890 WP_021231635.1 403913..404500(-) (ssb) [Aeromonas veronii strain BIM B-1812]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGAAAGACCCGGAAGTACGCTACATGCCGAGTGG
CAATGCTGTGGCCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCATAACGTGTCTTTGATTGGCAAGCTGGCAGAGATTGCTGGTGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGTAAATGGCAGGATCAAAGTGGTCAAGATCGTTATACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTTCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCACCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.844

100

0.703
  ssb Glaesserella parasuis strain SC1401

53.368

98.974

0.528
  ssb Neisseria gonorrhoeae MS11

47.368

97.436

0.462
  ssb Neisseria meningitidis MC58

46.842

97.436

0.456