Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RZO07_RS28910 Genome accession   NZ_CP136583
Coordinates   6399212..6399616 (-) Length   134 a.a.
NCBI ID   WP_025131048.1    Uniprot ID   -
Organism   Pseudomonas protegens strain msBK 4-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6394212..6404616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZO07_RS28895 (RZO07_28895) - 6396035..6398098 (-) 2064 WP_110652425.1 methyl-accepting chemotaxis protein -
  RZO07_RS28900 (RZO07_28900) - 6398239..6398778 (-) 540 WP_317070420.1 chemotaxis protein CheW -
  RZO07_RS28905 (RZO07_28905) pilH 6398789..6399154 (-) 366 WP_011064000.1 twitching motility response regulator PilH -
  RZO07_RS28910 (RZO07_28910) pilG 6399212..6399616 (-) 405 WP_025131048.1 twitching motility response regulator PilG Regulator
  RZO07_RS28915 (RZO07_28915) gshB 6399851..6400822 (+) 972 WP_102881162.1 glutathione synthase -
  RZO07_RS28920 (RZO07_28920) - 6400953..6401852 (+) 900 WP_317070422.1 energy transducer TonB -
  RZO07_RS28925 (RZO07_28925) - 6401982..6402551 (+) 570 WP_102862072.1 YqgE/AlgH family protein -
  RZO07_RS28930 (RZO07_28930) ruvX 6402551..6402988 (+) 438 WP_102862073.1 Holliday junction resolvase RuvX -
  RZO07_RS28935 (RZO07_28935) pyrR 6403105..6403611 (+) 507 WP_060841533.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14766.31 Da        Isoelectric Point: 7.3848

>NTDB_id=891725 RZO07_RS28910 WP_025131048.1 6399212..6399616(-) (pilG) [Pseudomonas protegens strain msBK 4-2]
MEQHSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALSKIVDHHPGIIFVDIMMPRLDGYQTCALVKNHSAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPDFVALAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=891725 RZO07_RS28910 WP_025131048.1 6399212..6399616(-) (pilG) [Pseudomonas protegens strain msBK 4-2]
ATGGAACAGCATTCCAACGCCTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGCCGCACGGCCGAAATGCTGCT
GAAGAACGTCGGCTGTGAAGTCATTACCGCAGTGGACGGCTTCGAAGCGCTGTCGAAGATCGTCGATCATCACCCCGGAA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGACGGTTATCAGACCTGTGCGCTGGTGAAGAATCACAGCGCGTTCAAG
TCCATTCCCGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGACGCATCGTCGGCTCCGATCAGTT
TTTGACCAAACCCTTCAGCAAGGAAGAACTGCTGAGCGCAATCAAGGCCCACGTTCCGGACTTTGTCGCGCTTGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

93.284

0.709
  vicR Streptococcus mutans UA159

43.59

87.313

0.381