Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RZO07_RS09065 Genome accession   NZ_CP136583
Coordinates   1981343..1983574 (+) Length   743 a.a.
NCBI ID   WP_317072074.1    Uniprot ID   -
Organism   Pseudomonas protegens strain msBK 4-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1976343..1988574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZO07_RS09040 (RZO07_09040) - 1977468..1978127 (+) 660 WP_213664955.1 transglutaminase-like domain-containing protein -
  RZO07_RS09045 (RZO07_09045) - 1978170..1978793 (+) 624 WP_317072071.1 glutathione S-transferase -
  RZO07_RS09050 (RZO07_09050) - 1978926..1979858 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  RZO07_RS09055 (RZO07_09055) - 1979855..1980634 (+) 780 WP_102863930.1 ABC transporter permease -
  RZO07_RS09060 (RZO07_09060) - 1980688..1981203 (-) 516 WP_317072073.1 DUF2062 domain-containing protein -
  RZO07_RS09065 (RZO07_09065) comA 1981343..1983574 (+) 2232 WP_317072074.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RZO07_RS09070 (RZO07_09070) exbB 1983677..1984312 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RZO07_RS09075 (RZO07_09075) - 1984309..1984737 (+) 429 WP_317072075.1 biopolymer transporter ExbD -
  RZO07_RS09080 (RZO07_09080) lpxK 1984737..1985747 (+) 1011 WP_317072076.1 tetraacyldisaccharide 4'-kinase -
  RZO07_RS09085 (RZO07_09085) - 1985771..1985956 (+) 186 WP_011060103.1 Trm112 family protein -
  RZO07_RS09090 (RZO07_09090) kdsB 1985953..1986717 (+) 765 WP_170003433.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RZO07_RS09095 (RZO07_09095) - 1986717..1987181 (+) 465 WP_317072077.1 low molecular weight protein-tyrosine-phosphatase -
  RZO07_RS09100 (RZO07_09100) murB 1987178..1988197 (+) 1020 WP_317072078.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81486.98 Da        Isoelectric Point: 10.5159

>NTDB_id=891711 RZO07_RS09065 WP_317072074.1 1981343..1983574(+) (comA) [Pseudomonas protegens strain msBK 4-2]
MVIAMLALAAGLLALDFMPVLPPGWLLLLMVIGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDRLPQSLDGQTRWLEG
RVVGLPEPGAGVVRFELKDAQSRRERLPRRIRLAWHGGPPVNSGERWRLAVKLRRPAGLLNLHGFDYEAWLLARRIGATG
TVKDGQLLAPARQAWRDGLRQRVLAVEAHGRAAGLAALVMGDGSGLTREEWQLLQDTGTVHLMVISGQHISLLAAVIYLA
VAGLARYGLWPARWPWLPWACALAFVGALGYGLLAGFDVPVQRACVMVALVLLWRWRFRHLRAWWPLLLALNAVLLFEPL
ASLQPGFWLSFAAVAVLIFTFAGRLGSWRWWQSWTRAQCLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGGMAGLWPAWVAPLIPLWVWGLSSLGALFLLLPKGVPLRVLGWPLLLLAV
WPPQDPVPEGEVEVWQLDVGQGLSFILRTRDHAMLYDAGARVADFDLGERVVLPTLRKLGIRRLDLMLLSHADNDHAGGA
LAVQRGIAVSQVRSGEPEALPAALQSAPCDSGLSWHWNGARFTLWQWAEAADGNQASCVLLVEAGGERLLLTGDIDVHAE
RALLDSPLAVRIHWLQAPHHGSRTSSSMALLRRLAPKAVLISRGRGNAFGHPHPQVVARYRQLGMVIHDSAEQGALKLRL
GTFGQPESLRQQRRFWRDWPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=891711 RZO07_RS09065 WP_317072074.1 1981343..1983574(+) (comA) [Pseudomonas protegens strain msBK 4-2]
ATGGTTATAGCGATGCTGGCCCTGGCCGCAGGACTGCTGGCACTGGATTTCATGCCGGTGCTTCCGCCGGGCTGGTTGTT
GCTGCTGATGGTGATAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTTTGGCCT
GGGCCTGTGCATCTGGGCAATGGGCGCTGGATGATCGCCTGCCTCAGTCCCTGGATGGACAAACCCGCTGGCTGGAAGGG
CGAGTGGTTGGCTTACCGGAACCGGGGGCGGGTGTGGTGCGCTTTGAGCTCAAGGATGCCCAGTCCCGACGAGAGCGCCT
GCCGCGGCGAATTCGCCTGGCCTGGCATGGCGGGCCACCTGTCAATAGCGGCGAACGCTGGCGCCTGGCGGTCAAGCTGC
GGCGTCCTGCCGGTCTGCTCAATCTTCACGGTTTCGATTACGAAGCCTGGCTGCTGGCACGGCGCATTGGGGCCACCGGC
ACGGTCAAGGATGGGCAACTGCTGGCGCCGGCACGCCAAGCCTGGCGTGATGGGCTGCGCCAGCGTGTACTCGCGGTCGA
GGCCCACGGCCGCGCCGCAGGCCTGGCGGCATTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGAATGGCAACTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATATCCGGACAGCACATCAGCCTGCTGGCCGCAGTGATCTACCTTGCC
GTGGCAGGGCTGGCTCGTTACGGGCTTTGGCCCGCGCGCTGGCCCTGGCTGCCCTGGGCCTGCGCCCTGGCCTTTGTCGG
GGCACTGGGCTACGGACTGCTGGCAGGGTTCGATGTGCCGGTGCAGAGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTCT
GGCGCTGGCGCTTTCGTCACCTGCGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGTTCGAGCCCCTG
GCCAGCTTGCAGCCAGGGTTCTGGCTGTCCTTTGCGGCGGTGGCGGTGCTCATCTTCACCTTTGCCGGGCGCCTAGGTTC
CTGGCGTTGGTGGCAGAGTTGGACCCGCGCCCAGTGTTTGATGGGTATTGGCCTGTTGCCACCCTTGCTGGCCCTTGGCT
TGCCCATCAGTCTCAGTGGTCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTTCTGCCCCCGGCCTTG
CTGGGCTGTCTGTTGTTGCCTGTGCCTTATGTGGGTGAAGGCTTGTTATGGCTGGCGGGCGGCCTGCTGGATGGGCTGTT
CCGGCTACTGGGGGGGATGGCCGGGTTGTGGCCAGCCTGGGTGGCACCGTTGATCCCCCTTTGGGTTTGGGGTCTGAGCA
GCTTGGGCGCGCTGTTTTTGCTGTTGCCAAAGGGCGTGCCACTGCGGGTGTTGGGTTGGCCGCTGTTGCTGCTGGCAGTC
TGGCCTCCCCAGGACCCGGTGCCTGAGGGCGAGGTGGAGGTCTGGCAGTTGGATGTGGGGCAGGGGCTGTCGTTCATTCT
GCGTACCCGTGATCACGCGATGTTGTATGACGCCGGTGCGCGAGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCGTAAGCTTGGCATTCGACGGCTGGACTTGATGCTGCTCAGCCACGCCGATAACGATCATGCCGGAGGCGCC
CTGGCAGTCCAGCGCGGGATAGCGGTGAGCCAGGTGCGCAGCGGCGAGCCTGAGGCCTTGCCGGCTGCCCTGCAGTCGGC
CCCCTGTGATAGCGGGCTGAGCTGGCACTGGAATGGCGCTCGCTTCACGCTGTGGCAGTGGGCGGAGGCGGCAGACGGCA
ACCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCACCGGCGATATCGATGTCCATGCTGAG
CGTGCCTTGCTCGACAGTCCGCTGGCGGTTCGCATTCACTGGTTGCAGGCGCCCCATCATGGCAGCCGTACCTCATCCTC
CATGGCCTTGCTCCGGCGGCTGGCGCCGAAGGCGGTGCTGATTTCCCGGGGGCGGGGCAATGCCTTTGGCCATCCTCATC
CCCAGGTGGTGGCGCGCTACCGGCAATTGGGCATGGTGATTCATGACAGTGCCGAGCAAGGTGCACTGAAGCTGCGGCTG
GGGACTTTCGGCCAGCCTGAAAGCCTGCGCCAACAGCGGCGCTTCTGGCGCGACTGGCCAGCAATGCCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.877

96.501

0.616