Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RZO07_RS09070 Genome accession   NZ_CP136583
Coordinates   1983677..1984312 (+) Length   211 a.a.
NCBI ID   WP_162884118.1    Uniprot ID   -
Organism   Pseudomonas protegens strain msBK 4-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978677..1989312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZO07_RS09050 (RZO07_09050) - 1978926..1979858 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  RZO07_RS09055 (RZO07_09055) - 1979855..1980634 (+) 780 WP_102863930.1 ABC transporter permease -
  RZO07_RS09060 (RZO07_09060) - 1980688..1981203 (-) 516 WP_317072073.1 DUF2062 domain-containing protein -
  RZO07_RS09065 (RZO07_09065) comA 1981343..1983574 (+) 2232 WP_317072074.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RZO07_RS09070 (RZO07_09070) exbB 1983677..1984312 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RZO07_RS09075 (RZO07_09075) - 1984309..1984737 (+) 429 WP_317072075.1 biopolymer transporter ExbD -
  RZO07_RS09080 (RZO07_09080) lpxK 1984737..1985747 (+) 1011 WP_317072076.1 tetraacyldisaccharide 4'-kinase -
  RZO07_RS09085 (RZO07_09085) - 1985771..1985956 (+) 186 WP_011060103.1 Trm112 family protein -
  RZO07_RS09090 (RZO07_09090) kdsB 1985953..1986717 (+) 765 WP_170003433.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RZO07_RS09095 (RZO07_09095) - 1986717..1987181 (+) 465 WP_317072077.1 low molecular weight protein-tyrosine-phosphatase -
  RZO07_RS09100 (RZO07_09100) murB 1987178..1988197 (+) 1020 WP_317072078.1 UDP-N-acetylmuramate dehydrogenase -
  RZO07_RS09105 (RZO07_09105) - 1988449..1988919 (+) 471 WP_317072079.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.10 Da        Isoelectric Point: 7.3617

>NTDB_id=891712 RZO07_RS09070 WP_162884118.1 1983677..1984312(+) (exbB) [Pseudomonas protegens strain msBK 4-2]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=891712 RZO07_RS09070 WP_162884118.1 1983677..1984312(+) (exbB) [Pseudomonas protegens strain msBK 4-2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCGGTGGGCATCATCGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGAGTCACCCCGCCCCATTTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAGAAACTCAAGGAACTGCGTGCCGATTCGCCCCTGGGAGAGATCCTGGCAGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAGGCGGCGGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCCCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGATCGGGCATGACCAGCAACGCTGCAGTGCTTGCCGGTGGCATTTCCAAGGCACTGATCACCACTGCC
GCCGGTTTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGTAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877