Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV27_RS04805 Genome accession   NZ_AP024889
Coordinates   1011527..1012921 (+) Length   464 a.a.
NCBI ID   WP_125320437.1    Uniprot ID   A0A427U5J6
Organism   Vibrio pectenicida strain LMG 19642     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006527..1017921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV27_RS04785 - 1006876..1007349 (+) 474 WP_125320403.1 hypothetical protein -
  OCV27_RS04790 - 1007400..1008041 (-) 642 WP_125320404.1 outer membrane beta-barrel protein -
  OCV27_RS04800 uvrB 1009168..1011198 (+) 2031 WP_125320405.1 excinuclease ABC subunit UvrB -
  OCV27_RS04805 luxO 1011527..1012921 (+) 1395 WP_125320437.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV27_RS04810 luxU 1012926..1013264 (+) 339 WP_125320406.1 quorum-sensing phosphorelay protein LuxU -
  OCV27_RS04815 yvcK 1013250..1014137 (-) 888 WP_125320407.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCV27_RS04820 moaA 1014439..1015425 (+) 987 WP_125320408.1 GTP 3',8-cyclase MoaA -
  OCV27_RS04825 moaB 1015510..1016022 (+) 513 WP_125320409.1 molybdenum cofactor biosynthesis protein B -
  OCV27_RS04830 moaC 1016032..1016511 (+) 480 WP_125320410.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV27_RS04835 moaD 1016508..1016753 (+) 246 WP_125320411.1 molybdopterin synthase sulfur carrier subunit -
  OCV27_RS04840 moaE 1016756..1017205 (+) 450 WP_125320412.1 molybdopterin synthase catalytic subunit MoaE -
  OCV27_RS04845 nrtS 1017260..1017463 (+) 204 WP_125320413.1 nitrate/nitrite transporter NrtS -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51724.02 Da        Isoelectric Point: 5.5595

>NTDB_id=89171 OCV27_RS04805 WP_125320437.1 1011527..1012921(+) (luxO) [Vibrio pectenicida strain LMG 19642]
MQQDTDIQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLSFRTPDLILLDLRLPDMTGMNVLHAVKQKN
ADVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLRNAANNPGNQNYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLTPEVVNRFAQYEWPGNVRQLQNVLRNVVVLNNGENISMDMLPPPLNVPTDNQI
RVNWEEKEKFTVNDIFPLWLTEKKAIEQAIDACDGNIPKAAGYLDVSPSTLYRKLQNWNVKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=89171 OCV27_RS04805 WP_125320437.1 1011527..1012921(+) (luxO) [Vibrio pectenicida strain LMG 19642]
ATGCAACAAGACACAGATATACAAAAGTCCAAATATTTGTTGATGGTAGAGGATACTGCTTCAGTAGCAGCACTATATCG
TTCTTACCTTACTCCCCTTGGTATTGATATTAATATTGTTGGCACTGGGCGAGATGCAATTGAAAGCCTCAGCTTTCGTA
CTCCTGATCTTATTTTATTGGATCTGAGGCTTCCCGATATGACGGGTATGAACGTTTTGCATGCGGTAAAGCAAAAGAAT
GCTGATGTTCCAGTTATATTTATGACAGCTCATGGCTCAATTGATACAGCTGTTGAAGCTATGCGTCATGGGGCCCAAGA
TTTTCTTATCAAACCTTGCGAAGCCGATCGATTACGCGTGACAGTCAATAACGCAATTCGTAAAGCAAGTAAGCTTAGAA
ATGCGGCAAATAATCCTGGGAATCAAAACTACCAAGGCTTTATTGGTAGTAGTCAGACCATGCAGGCTGTCTATCGAACC
ATAGATTCTGCTGCCTCAAGTAAGGCTAGTATCTTTATTACAGGTGAGAGTGGGACGGGTAAAGAGGTGTGTGCTGAAGC
GATTCATGCGGCAAGTAAGCGTGGCGATAAACCTTTTATCGCGATTAACTGTGCTGCAATCCCTAAAGACCTTATTGAAA
GTGAGTTGTTTGGTCATGTGAAAGGAGCCTTTACTGGTGCTGCGACTGACAGACAAGGTGCAGCAGAGTTAGCAGATGGT
GGCACATTATTTCTTGATGAATTGTGCGAGATGGACCTAGATTTGCAAACCAAACTCTTACGTTTTATCCAAACTGGAAC
ATTCCAGAAAGTAGGCTCATCAAAAATGAAGAGCGTGGATGTACGTTTTGTTTGTGCAACAAACCGTGATCCGTGGAAGG
AGGTTCAAGAGGGACGCTTTAGGGAAGATCTATACTATCGATTATACGTGATCCCATTACATTTACCTCCATTGAGAGAG
CGTGGAGATGATGTCATAGAAATTGCTTATTCTCTATTGGGTTTTATGTCTAAGGAAGAAGGCAAAGATTTTGTTAGGCT
TACGCCAGAGGTAGTGAATCGTTTTGCTCAGTATGAGTGGCCAGGTAACGTTCGTCAGTTGCAAAACGTATTACGCAATG
TTGTTGTGCTTAACAATGGAGAAAATATATCAATGGATATGTTACCTCCACCACTTAATGTGCCTACGGATAATCAGATC
AGGGTAAACTGGGAAGAAAAAGAAAAGTTCACAGTTAATGATATCTTCCCTCTCTGGTTGACAGAGAAGAAAGCTATAGA
GCAAGCTATTGATGCATGTGATGGGAATATCCCTAAAGCAGCTGGCTATTTAGATGTCAGCCCGTCTACGCTTTACCGTA
AGCTTCAAAATTGGAATGTCAAGGAAACACAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427U5J6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.277

96.552

0.843
  pilR Pseudomonas aeruginosa PAK

37.472

97.198

0.364

Multiple sequence alignment