Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KNP07_RS24480 Genome accession   NZ_CP152075
Coordinates   5255938..5256363 (+) Length   141 a.a.
NCBI ID   WP_128672594.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NCTR 501     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5250938..5261363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNP07_RS24465 (KNP07_24470) pilX 5251508..5252095 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  KNP07_RS24470 (KNP07_24475) pilY1 5252107..5255592 (+) 3486 WP_128672593.1 type 4a pilus biogenesis protein PilY1 -
  KNP07_RS24475 (KNP07_24480) pilY2 5255594..5255941 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  KNP07_RS24480 (KNP07_24485) comF 5255938..5256363 (+) 426 WP_128672594.1 type 4a pilus minor pilin PilE Machinery gene
  KNP07_RS24485 (KNP07_24490) ispH 5256410..5257354 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KNP07_RS24490 (KNP07_24495) fkpB 5257440..5257880 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KNP07_RS24495 (KNP07_24500) lspA 5257873..5258382 (-) 510 WP_003094728.1 signal peptidase II -
  KNP07_RS24500 (KNP07_24505) ileS 5258375..5261206 (-) 2832 WP_003141556.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15260.26 Da        Isoelectric Point: 9.8399

>NTDB_id=891559 KNP07_RS24480 WP_128672594.1 5255938..5256363(+) (comF) [Pseudomonas aeruginosa strain NCTR 501]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGEHGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=891559 KNP07_RS24480 WP_128672594.1 5255938..5256363(+) (comF) [Pseudomonas aeruginosa strain NCTR 501]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCAGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTAGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACGCTCAATCAGCTCGGCGAACACGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.52

90.071

0.383
  pilE Legionella pneumophila str. Paris

37.324

100

0.376
  pilE Legionella pneumophila strain ERS1305867

37.324

100

0.376