Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RY019_RS07580 Genome accession   NZ_CP136540
Coordinates   1624080..1624706 (+) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter hormaechei strain E378246     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1619080..1629706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY019_RS07560 (RY019_07555) - 1619479..1621239 (-) 1761 WP_404349388.1 AAA family ATPase -
  RY019_RS07565 (RY019_07560) matP 1621426..1621878 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  RY019_RS07570 (RY019_07565) ompA 1621944..1622996 (-) 1053 WP_017694761.1 porin OmpA -
  RY019_RS07575 (RY019_07570) sulA 1623353..1623862 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  RY019_RS07580 (RY019_07575) sxy/tfoX 1624080..1624706 (+) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  RY019_RS07585 (RY019_07580) yccS 1624663..1626825 (-) 2163 WP_023299744.1 YccS family putative transporter -
  RY019_RS07590 (RY019_07585) - 1626844..1627290 (-) 447 WP_022647660.1 YccF domain-containing protein -
  RY019_RS07595 (RY019_07590) helD 1627413..1629467 (+) 2055 WP_126502944.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=891516 RY019_RS07580 WP_023299743.1 1624080..1624706(+) (sxy/tfoX) [Enterobacter hormaechei strain E378246]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=891516 RY019_RS07580 WP_023299743.1 1624080..1624706(+) (sxy/tfoX) [Enterobacter hormaechei strain E378246]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572