Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU30_RS08140 Genome accession   NZ_AP024887
Coordinates   1722461..1723873 (-) Length   470 a.a.
NCBI ID   WP_077312341.1    Uniprot ID   -
Organism   Vibrio palustris strain CECT 9027     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1717461..1728873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS08105 moaE 1718076..1718534 (-) 459 WP_077312354.1 molybdopterin synthase catalytic subunit MoaE -
  OCU30_RS08110 moaD 1718536..1718781 (-) 246 WP_077312353.1 molybdopterin synthase sulfur carrier subunit -
  OCU30_RS08115 moaC 1718778..1719257 (-) 480 WP_077312351.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU30_RS08120 moaB 1719270..1719776 (-) 507 WP_077312349.1 molybdenum cofactor biosynthesis protein B -
  OCU30_RS08125 moaA 1719888..1720877 (-) 990 WP_077312347.1 GTP 3',8-cyclase MoaA -
  OCU30_RS08130 yvcK 1721179..1722069 (+) 891 WP_077312345.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU30_RS08135 luxU 1722108..1722455 (-) 348 WP_077312344.1 quorum-sensing phosphorelay protein LuxU -
  OCU30_RS08140 luxO 1722461..1723873 (-) 1413 WP_077312341.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU30_RS08145 uvrB 1724136..1726166 (-) 2031 WP_077312339.1 excinuclease ABC subunit UvrB -
  OCU30_RS08155 - 1727047..1727295 (+) 249 WP_077312337.1 hypothetical protein -
  OCU30_RS08160 - 1727538..1728518 (+) 981 WP_077312335.1 MDR family oxidoreductase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52544.17 Da        Isoelectric Point: 5.2607

>NTDB_id=89146 OCU30_RS08140 WP_077312341.1 1722461..1723873(-) (luxO) [Vibrio palustris strain CECT 9027]
MELEYPPQHSKYLLMVEDTASVAALYRSYLTPLNIDITLVGTGHDAIRSISEREPDLILLDLRLPDMTGMDVLYEVKRDH
PHVPIVFMTAHGSIDTAVDAMRHGAQDFLIKPCEADRLRVTVNNAMRKASKLKDDALDPDNQNYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRVDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGFMSKEEGKGFVRMASEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREILLPMLPPPLNQPVEPQP
VTSGNSMMDMPLSVSDIHPLWLTEKLAIERAIEACDGNIPRAAGYLDVSPSTLYRKLQTWNSQKVKEKES

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=89146 OCU30_RS08140 WP_077312341.1 1722461..1723873(-) (luxO) [Vibrio palustris strain CECT 9027]
ATGGAATTAGAATATCCCCCTCAACATTCAAAGTATTTGTTGATGGTGGAAGATACGGCATCAGTGGCAGCACTGTATCG
CTCGTATCTTACGCCGTTAAACATTGATATTACGCTGGTTGGTACCGGTCATGATGCGATTCGTTCAATTTCCGAGCGAG
AGCCTGATCTGATTCTGCTTGATTTACGCCTGCCTGATATGACGGGCATGGACGTGTTGTACGAAGTCAAACGTGATCAC
CCACATGTACCGATTGTGTTTATGACTGCGCATGGTTCCATCGATACCGCCGTGGATGCGATGCGTCATGGTGCTCAAGA
TTTTTTAATTAAGCCGTGTGAAGCGGATCGCTTACGGGTTACTGTAAACAATGCGATGCGTAAAGCTAGCAAGTTAAAAG
ATGACGCGTTGGACCCCGATAATCAAAATTATCAAGGGTTTATTGGTAGCAGCCAAACGATGCAAGCGGTATATCGTACG
ATTGATTCAGCTGCCAGCAGTAAAGCAAGTATTTTTATTACCGGAGAAAGTGGCACGGGTAAAGAAGTATGTGCGGAAGC
AATTCATGCCGCGAGTAAACGCGTAGATAAACCGTTTATTGCCATAAACTGCGCGGCGATTCCGAAAGATTTAATTGAGA
GTGAATTGTTTGGTCATGTGAAAGGGGCGTTCACGGGCGCGGCAACCGATCGCCAAGGTGCCGCTGAGCTTGCCGACGGT
GGTACGCTCTTTTTGGATGAGTTGTGCGAAATGGATTTGGATCTGCAAACTAAATTATTAAGATTTATCCAAACCGGAAC
GTTCCAAAAAGTCGGCTCTTCTAAGATGAAAAGTGTTGATGTACGCTTTGTATGTGCAACTAACCGTGATCCATGGAAAG
AAGTACAAGAAGGCCGTTTTCGTGAAGATTTATATTATCGTTTATACGTGATTCCACTGCACTTACCTCCGTTAAGAGAG
CGAGGTGAAGATGTGATTGAAATTGCTTATTCCTTGCTCGGTTTTATGTCGAAAGAGGAAGGCAAAGGCTTTGTGCGCAT
GGCTTCTGAAGTTGTTGAGCGCTTTAAACAGTATGAATGGCCGGGTAATGTACGTCAGCTACAAAACGTATTGCGTAATG
TTGTGGTGTTAAATGAAGGCCGAGAGATATTGCTTCCTATGTTGCCACCACCGCTCAATCAACCCGTAGAGCCCCAACCG
GTCACCAGTGGTAACAGTATGATGGATATGCCGCTATCAGTGAGTGATATTCATCCTTTATGGTTAACTGAAAAACTTGC
GATAGAGCGCGCTATTGAAGCGTGTGACGGAAATATTCCTCGTGCCGCTGGTTACCTCGATGTTAGCCCTTCGACCTTGT
ATCGTAAATTACAAACGTGGAACAGTCAGAAAGTGAAAGAAAAGGAAAGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.14

95.957

0.836

Multiple sequence alignment