Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAGT87_RS09270 Genome accession   NZ_CP152071
Coordinates   1009595..1011259 (+) Length   554 a.a.
NCBI ID   WP_341260530.1    Uniprot ID   -
Organism   Vibrio cholerae strain Sudan_2019_18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1004595..1016259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGT87_RS09250 (AAGT87_09255) dnaK 1005662..1007569 (-) 1908 WP_000516147.1 molecular chaperone DnaK -
  AAGT87_RS09255 (AAGT87_09260) - 1007727..1007840 (+) 114 WP_001889140.1 hypothetical protein -
  AAGT87_RS09260 (AAGT87_09265) grpE 1007833..1008435 (-) 603 WP_000064038.1 nucleotide exchange factor GrpE -
  AAGT87_RS09265 (AAGT87_09270) nadK 1008581..1009465 (+) 885 WP_000742830.1 NAD(+) kinase -
  AAGT87_RS09270 (AAGT87_09275) recN 1009595..1011259 (+) 1665 WP_341260530.1 DNA repair protein RecN Machinery gene
  AAGT87_RS09275 (AAGT87_09280) bamE 1011418..1011777 (+) 360 WP_001160907.1 outer membrane protein assembly factor BamE -
  AAGT87_RS09280 (AAGT87_09285) - 1011855..1012160 (-) 306 WP_001918351.1 RnfH family protein -
  AAGT87_RS09285 (AAGT87_09290) - 1012163..1012597 (-) 435 WP_000815876.1 type II toxin-antitoxin system RatA family toxin -
  AAGT87_RS09290 (AAGT87_09295) smpB 1012781..1013266 (+) 486 WP_341264991.1 SsrA-binding protein SmpB -
  AAGT87_RS09300 (AAGT87_09305) - 1013868..1015136 (+) 1269 WP_353495439.1 integrase domain-containing protein -
  AAGT87_RS09305 (AAGT87_09310) - 1015141..1015541 (+) 401 Protein_867 transposase -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61281.95 Da        Isoelectric Point: 5.5765

>NTDB_id=891422 AAGT87_RS09270 WP_341260530.1 1009595..1011259(+) (recN) [Vibrio cholerae strain Sudan_2019_18]
MLAHLSINNFAIVKSLQLELSKGMTTITSETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=891422 AAGT87_RS09270 WP_341260530.1 1009595..1011259(+) (recN) [Vibrio cholerae strain Sudan_2019_18]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACTAGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGTCTCGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCTAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAGCTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTGGCTCTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
AAAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAACTGACAGCGCTCCC
TTCAATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAATTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTACAGCAAATTGCTCAGCTAGATTGTTCTGATGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACGTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCAGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCGACTCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTTGCACGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

36.767

100

0.374
  recN Bacillus subtilis subsp. subtilis str. 168

35.017

100

0.363