Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCU30_RS06925 Genome accession   NZ_AP024887
Coordinates   1464993..1466417 (+) Length   474 a.a.
NCBI ID   WP_077312785.1    Uniprot ID   A0A1R4B268
Organism   Vibrio palustris strain CECT 9027     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1459993..1471417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS06900 - 1460460..1460891 (+) 432 WP_077312803.1 hypothetical protein -
  OCU30_RS06905 yegD 1461191..1462543 (-) 1353 WP_077313660.1 molecular chaperone -
  OCU30_RS06910 - 1462782..1463537 (+) 756 WP_077312791.1 DUF2076 domain-containing protein -
  OCU30_RS06915 - 1463604..1464080 (-) 477 WP_077312789.1 NYN domain-containing protein -
  OCU30_RS06920 - 1464368..1464700 (-) 333 WP_077312787.1 hypothetical protein -
  OCU30_RS06925 sbcB 1464993..1466417 (+) 1425 WP_077312785.1 exodeoxyribonuclease I Machinery gene
  OCU30_RS06930 - 1466436..1466825 (+) 390 WP_077312783.1 CidA/LrgA family protein -
  OCU30_RS06935 - 1466825..1467511 (+) 687 WP_077312781.1 LrgB family protein -
  OCU30_RS06940 cdd 1467681..1468577 (+) 897 WP_077312779.1 cytidine deaminase -
  OCU30_RS06945 - 1468665..1469057 (-) 393 WP_077312777.1 thiol-disulfide oxidoreductase DCC family protein -
  OCU30_RS06950 - 1469119..1469805 (-) 687 WP_205408771.1 DUF1045 domain-containing protein -
  OCU30_RS06955 purT 1470203..1471378 (+) 1176 WP_077312773.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54641.89 Da        Isoelectric Point: 5.4344

>NTDB_id=89140 OCU30_RS06925 WP_077312785.1 1464993..1466417(+) (sbcB) [Vibrio palustris strain CECT 9027]
MQQDHQPTFFFFDYETWGTSPAKDRPSQFAGIRTDKDFNIIGEPVVLYCQLPADYLPNPEAALVTGIKPQLAMQKGVPEP
EFIQKIYQELATPNTTSVGYNNIRFDDEVTRYTSYRNFLDPYEWAYKNGNSRWDLLDVMRACHALRPEGITWPQNEEGYP
SFKLEHLSKENGIEHENAHDALADVIATIEMAKKVKQAQPKLFEYFYSMRNKRPLNDLIDIVNMTPLMHVSGMLGRDCQY
TSWIVPIAWHPTNKNAVIVVDLAKDPQVILDLSAEDLLTRLYTKKNDLALDESPVPVKLVHINKCPILAPAKTLTADNAA
HIGIDRQQCLANLALLRDHPEVREKLVNLFAHEREFPANDDVDTQLYNGFFSPADKAAMAIIRDSHPENLGALDIQFSDP
RIEPLLFRYRARNFPWTLSESEQHRWKNHCRDYFENNIESYMLNLENLVHEHESDTHKMALLKAVYQYVEHIAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=89140 OCU30_RS06925 WP_077312785.1 1464993..1466417(+) (sbcB) [Vibrio palustris strain CECT 9027]
ATGCAACAGGATCACCAGCCAACTTTCTTTTTCTTTGACTATGAAACGTGGGGAACCAGTCCCGCTAAAGATCGGCCAAG
CCAGTTCGCAGGGATTCGCACAGACAAAGATTTCAATATCATTGGCGAACCTGTCGTTCTGTATTGTCAATTGCCTGCAG
ATTATTTACCCAACCCTGAAGCGGCGTTAGTAACAGGCATTAAACCTCAGCTAGCAATGCAGAAAGGTGTTCCAGAGCCC
GAGTTTATCCAAAAAATTTATCAAGAACTCGCCACACCAAACACCACGAGTGTTGGTTATAATAACATTCGTTTTGATGA
TGAAGTGACGCGTTATACCTCATACCGCAATTTTCTAGACCCTTATGAATGGGCGTACAAAAACGGCAATTCTCGTTGGG
ATCTGTTAGATGTAATGCGTGCTTGTCATGCATTGCGTCCTGAAGGCATCACATGGCCCCAAAATGAGGAAGGCTATCCT
AGCTTTAAACTCGAACATTTATCGAAAGAAAATGGTATTGAGCACGAAAATGCCCATGATGCATTAGCCGATGTCATCGC
CACAATTGAAATGGCCAAAAAGGTCAAACAAGCTCAACCAAAATTATTTGAGTATTTCTATAGCATGCGCAATAAGCGTC
CATTGAACGATTTAATCGATATCGTTAATATGACGCCACTAATGCATGTATCGGGTATGCTGGGTCGTGACTGTCAATAT
ACAAGTTGGATAGTCCCAATAGCTTGGCACCCTACCAATAAAAACGCGGTTATTGTGGTCGACTTAGCCAAAGATCCACA
GGTTATCTTAGATCTCTCTGCCGAAGATTTACTAACGCGCCTTTACACTAAGAAAAATGACCTAGCGCTTGACGAATCGC
CCGTTCCGGTAAAATTAGTGCATATCAACAAGTGTCCAATTTTAGCGCCAGCAAAAACCCTCACTGCCGATAACGCCGCG
CATATTGGTATTGACCGTCAGCAGTGTTTAGCGAATCTAGCGCTATTACGTGACCACCCAGAAGTCCGAGAAAAGCTGGT
GAATCTTTTTGCGCACGAACGTGAATTTCCAGCCAATGATGACGTTGATACGCAACTATATAATGGCTTTTTTTCGCCTG
CGGATAAAGCGGCTATGGCCATCATCCGAGACAGTCATCCGGAAAATCTCGGCGCATTGGACATCCAGTTTAGCGATCCT
CGTATTGAACCATTATTGTTCCGATACCGTGCTCGCAACTTTCCTTGGACATTAAGTGAAAGCGAGCAACATCGCTGGAA
AAATCATTGTCGCGATTACTTCGAAAACAATATTGAATCTTATATGCTCAACTTAGAAAACCTAGTGCATGAGCACGAAA
GCGACACCCATAAAATGGCACTGCTCAAAGCGGTGTATCAATACGTAGAACATATTGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4B268

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

73.784

99.789

0.736

Multiple sequence alignment