Detailed information NTG0089134

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU30_RS02255
• Genome accession: NZ_AP024887
• Coordinates: 458927..459904 (+)
• Length: 325 a.a.
• NCBI ID: WP_077315407.1
• Uniprot ID: A0A1R4B7X3
• Organism: Vibrio palustris strain CECT 9027
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 453927..464904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU30_RS02220	ftsB	454022..454315 (+)	294	WP_077315400.1	cell division protein FtsB	-
OCU30_RS02225	ispD	454312..455013 (+)	702	WP_077315401.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU30_RS02230	ispF	455010..455486 (+)	477	WP_077315402.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU30_RS02235	truD	455506..456555 (+)	1050	WP_077315403.1	tRNA pseudouridine(13) synthase TruD	-
OCU30_RS02240	surE	456548..457303 (+)	756	WP_077315404.1	5'/3'-nucleotidase SurE	-
OCU30_RS02245	-	457309..457935 (+)	627	WP_077315405.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU30_RS02250	-	457935..458852 (+)	918	WP_077315406.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCU30_RS02255	rpoS	458927..459904 (+)	978	WP_077315407.1	RNA polymerase sigma factor RpoS	Regulator
OCU30_RS02260	mutS	460004..462565 (-)	2562	WP_077315408.1	DNA mismatch repair protein MutS	-
OCU30_RS02265	pncC	462620..463144 (+)	525	WP_077315409.1	nicotinamide-nucleotide amidase	-
OCU30_RS02270	recA	463293..464336 (+)	1044	WP_077315410.1	recombinase RecA	Machinery gene
OCU30_RS02275	recX	464409..464870 (+)	462	WP_077315411.1	recombination regulator RecX	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37168.02 Da
• Isoelectric Point: 4.9537

>NTDB_id=89134 OCU30_RS02255 WP_077315407.1 458927..459904(+) (rpoS) [Vibrio palustris strain CECT 9027]
MSISNTATKVEEFEFDAIHHNDSSSDAPTKKSNDSHEDVEVSSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGCDT
ARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQRLDHEPTAEEIAFELDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDGNHSDPEVS
TQDNDIKASLVNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILVKQGLSMESLFN
VETEF

Nucleotide

• Length: 978 bp

>NTDB_id=89134 OCU30_RS02255 WP_077315407.1 458927..459904(+) (rpoS) [Vibrio palustris strain CECT 9027]
ATGAGTATTAGTAATACCGCTACAAAGGTTGAAGAATTTGAGTTTGATGCAATTCATCATAATGATTCGAGTTCTGATGC
TCCAACGAAAAAAAGTAACGATTCTCACGAAGATGTAGAAGTATCTTCAAAGAGTTTAGACGCGACTCAAATGTACTTAA
GTGAGATCGGCTTTTCACCACTCTTAACAGCAGAAGAAGAAGTACTGTACGCTCGACGTGCACTTCGTGGCTGTGATACT
GCTCGAAAACGCATGATTGAAAGTAACTTGCGATTAGTTGTTAAAATTTCTCGCCGTTATGGTAATCGTGGTCTAGCTCT
TCTTGATCTGATTGAAGAAGGTAACCTTGGTCTTATTCGCGCCGTCGAAAAATTTGATCCAGAACGTGGATTTCGTTTTT
CAACGTATGCAACGTGGTGGATTCGACAAACCATTGAACGCGCTCTTATGAACCAAACGCGTACAATTCGTTTACCTATT
CACGTGGTAAAAGAGCTCAACATTTACTTGCGTACTGCACGTGAATTGTCTCAGCGCTTAGACCACGAGCCGACAGCAGA
AGAAATCGCGTTCGAGCTTGATAAGCCAGTGGAAGATGTCAGTAAAATGCTGCGTCTCAATGAGCGTATCAGTTCAGTAG
ATACTCCAATTGGTGGTGATGGCGATAAAGCGTTATTAGATATCATTCCTGACGGTAACCATTCTGATCCTGAAGTTTCG
ACTCAAGACAATGATATCAAAGCGTCACTAGTCAACTGGTTAGATGAACTGAATCCAAAGCAGAAAGAAGTTCTAGCTCG
TCGTTTTGGGTTGTTGGGCTATGAACCCTCTACGTTAGAGGAAGTCGGCCGTGAAATCAGTCTGACCCGTGAACGTGTTC
GTCAGATTCAAGTAGAAGGCTTACGACGCTTACGTGAGATCCTTGTGAAACAAGGTTTGAGCATGGAATCGCTATTTAAC
GTTGAAACTGAATTCTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (253-306)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-77)

3D structure

• AlphaFold DB: A0A1R4B7X3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.434	100	0.852