Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RYH72_RS25045 Genome accession   NZ_CP136506
Coordinates   5520465..5521805 (+) Length   446 a.a.
NCBI ID   WP_017683544.1    Uniprot ID   A0AAN4QBI6
Organism   Pseudomonas syringae pv. actinidiae strain YXH1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5515465..5526805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYH72_RS25020 (RYH72_005027) pgeF 5515649..5516377 (-) 729 WP_017683543.1 peptidoglycan editing factor PgeF -
  RYH72_RS25025 (RYH72_005028) rluD 5516374..5517336 (-) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RYH72_RS25030 (RYH72_005029) - 5517486..5518508 (+) 1023 WP_003381267.1 outer membrane protein assembly factor BamD -
  RYH72_RS25035 (RYH72_005030) - 5518638..5518877 (+) 240 WP_057403016.1 PP0621 family protein -
  RYH72_RS25040 (RYH72_005031) pilS 5518867..5520462 (+) 1596 WP_003381271.1 ATP-binding protein Regulator
  RYH72_RS25045 (RYH72_005032) pilR 5520465..5521805 (+) 1341 WP_017683544.1 sigma-54 dependent transcriptional regulator Regulator
  RYH72_RS25050 (RYH72_005033) - 5522266..5522883 (+) 618 WP_003381275.1 TetR/AcrR family transcriptional regulator -
  RYH72_RS25055 (RYH72_005034) - 5522965..5524080 (+) 1116 WP_017683545.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49937.04 Da        Isoelectric Point: 6.8233

>NTDB_id=891271 RYH72_RS25045 WP_017683544.1 5520465..5521805(+) (pilR) [Pseudomonas syringae pv. actinidiae strain YXH1]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPCATQPVRSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRINKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQIAAS
VLRRLAGNGAQPVARVHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=891271 RYH72_RS25045 WP_017683544.1 5520465..5521805(+) (pilR) [Pseudomonas syringae pv. actinidiae strain YXH1]
ATGAGCCCACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAGCTTCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCTCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCGGTGGCG
ATGATCACCGCCCACGGCAATCTGGACACGGCGATTCATGCGTTGAAAGCCGGAGCCTTCGACTTTGTGACCAAACCGGT
AGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCCTGCGCCACCCAACCGGTACGCAGCATCGACA
GCCGGCTGCTGGGCGACTCACCGCCGATGCGTACCTTGCGTAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCCATT
TACATCAGCGGCGAGTCGGGCAGCGGCAAAGAGCTGGTAGCCCGGCTGATCCACGAGCAAGGGCCGCGCATCAACAAACC
CTTCGTGCCGGTCAACTGCGGGGCGATTCCATCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCGGGCCTATTCCAGGCGGCACACAACGGGACACTGTTCCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAGAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGACGTGCGTATTCTGTGCGCCACCCACAAGGACCTGAATGTCGAAGTCGCTGCGGGCCGTTTCCGTCAGGACCTGT
ATTACCGGCTTAACGTGATCGAACTGCGTGTGCCTTCATTGCGCGAGCGGCGTGAAGATATCGATCAGATTGCAGCCAGC
GTTTTGCGACGGCTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCGTGCATGCGCAGGCTCTGGAAACACTGAAAAGTTA
TCGATTCCCTGGGAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACCCTCTGTGAAAACGATGAAATCCACG
CCAGCGACCTGCGCCTCGCCGAGTCCGCCAGCCCCCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGCTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.878

99.327

0.774
  pilR Acinetobacter baumannii strain A118

48.261

100

0.498