Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU38_RS12885 Genome accession   NZ_AP024886
Coordinates   15319..16413 (-) Length   364 a.a.
NCBI ID   WP_261824654.1    Uniprot ID   -
Organism   Vibrio neonatus strain JCM 21521     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 10319..21413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU38_RS12870 - 10921..11748 (+) 828 WP_261824651.1 SDR family oxidoreductase -
  OCU38_RS12875 - 11765..12730 (-) 966 WP_261824652.1 hypothetical protein -
  OCU38_RS12880 - 12724..15288 (-) 2565 WP_261824653.1 LuxQ periplasmic sensor domain-containing protein -
  OCU38_RS12885 luxP 15319..16413 (-) 1095 WP_261824654.1 substrate-binding domain-containing protein Regulator
  OCU38_RS12890 - 16398..16694 (-) 297 WP_261824655.1 GIY-YIG nuclease family protein -
  OCU38_RS12895 - 16709..17362 (-) 654 WP_261824656.1 YceH family protein -
  OCU38_RS12900 - 17569..17883 (+) 315 WP_021713314.1 DUF496 family protein -
  OCU38_RS12905 - 17959..18549 (+) 591 WP_261824657.1 pentapeptide repeat-containing protein -
  OCU38_RS12910 - 18546..19496 (-) 951 WP_261824658.1 LysR family transcriptional regulator -
  OCU38_RS12915 - 19572..20471 (-) 900 WP_152820416.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41693.41 Da        Isoelectric Point: 6.1063

>NTDB_id=89125 OCU38_RS12885 WP_261824654.1 15319..16413(-) (luxP) [Vibrio neonatus strain JCM 21521]
MRYTLTALLLLLYTSSCFANDLLLDYWQYDKYLAQHPTQSALTQAMHQRIYQAPVPLNVSQDKPIEIDIVYPGTQLSDYW
WRNIKALELRLNELGVDYRLRKYSSRPNMDYRREAESLQTALKNAPDYLVFTLDTSRHKKFAENLLANGNGKTKLILINI
TTPIKHWKDHQPLLYVGFDHVLGTKLLANEYMKAFPEQANFGMMYFSPGHISEARGDTFIKYMKTQGDYALKRAYFTNAN
RKSAYEATLSMIQKEPDLDFIYACSTDVAFGVTQALTKLDRHDVMVNGWGGGSEIEAVADGIIDFTVVRMTDDTGVAIAE
AIKLDLQNEPVPQVYSGDYEVLTKYDDEQTIEALKSKAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=89125 OCU38_RS12885 WP_261824654.1 15319..16413(-) (luxP) [Vibrio neonatus strain JCM 21521]
ATGCGATATACCCTGACAGCACTGTTGCTGTTGTTATACACCAGTTCATGTTTTGCCAATGATCTGCTACTTGATTACTG
GCAATACGATAAGTATTTAGCCCAGCATCCCACACAAAGTGCGCTGACTCAGGCAATGCATCAGCGTATTTATCAAGCCC
CAGTCCCTCTTAACGTTAGCCAAGATAAACCGATTGAAATCGATATCGTTTATCCGGGCACTCAGCTGTCTGATTATTGG
TGGCGCAATATTAAAGCATTGGAGTTGAGACTAAACGAGCTCGGTGTGGATTATCGACTGCGCAAGTATTCATCTCGTCC
AAATATGGATTACCGCCGTGAAGCTGAAAGCTTGCAAACTGCGCTTAAAAACGCCCCTGATTATCTCGTTTTCACCCTAG
ATACCAGTCGTCATAAAAAGTTCGCGGAGAATTTATTGGCTAACGGCAATGGCAAAACTAAACTCATTTTGATCAATATC
ACCACCCCGATAAAACACTGGAAAGATCATCAACCTCTGCTGTACGTTGGCTTTGATCATGTGCTTGGCACTAAGTTACT
CGCCAATGAATATATGAAAGCGTTTCCTGAGCAAGCCAACTTTGGAATGATGTATTTTTCACCGGGTCATATCAGCGAAG
CGCGGGGTGATACTTTTATTAAATACATGAAAACCCAAGGGGATTACGCATTAAAACGCGCTTATTTTACCAACGCTAAT
AGAAAATCGGCTTATGAAGCCACCTTGTCGATGATACAAAAAGAGCCTGATTTAGATTTCATTTACGCCTGCTCAACGGA
CGTCGCATTTGGCGTCACTCAAGCGCTAACAAAACTCGATAGACATGATGTAATGGTCAATGGTTGGGGTGGCGGCTCCG
AAATTGAGGCGGTTGCAGATGGCATCATTGATTTTACGGTAGTGCGTATGACTGACGATACGGGGGTAGCGATAGCTGAG
GCGATAAAGCTGGATTTGCAAAATGAGCCAGTGCCACAAGTGTATTCTGGCGATTATGAAGTGCTTACCAAATACGATGA
CGAGCAAACAATAGAGGCGTTAAAAAGCAAAGCGTTCCGCTATTCAGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(76-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

50.954

100

0.514

Multiple sequence alignment