Detailed information NTG0089111

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCU38_RS10270
• Genome accession: NZ_AP024885
• Coordinates: 2231080..2231958 (+)
• Length: 292 a.a.
• NCBI ID: WP_261823006.1
• Uniprot ID: -
• Organism: Vibrio neonatus strain JCM 21521
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2226080..2236958

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU38_RS10250	nadC	2226567..2227454 (+)	888	WP_261823002.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OCU38_RS10255	-	2227854..2228258 (+)	405	WP_261823003.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OCU38_RS10260	-	2228255..2229799 (+)	1545	WP_261823004.1	GspE/PulE family protein	-
OCU38_RS10265	-	2229792..2231000 (+)	1209	WP_261823005.1	type II secretion system F family protein	-
OCU38_RS10270	pilD	2231080..2231958 (+)	879	WP_261823006.1	A24 family peptidase	Machinery gene
OCU38_RS10275	coaE	2231985..2232584 (+)	600	WP_261823007.1	dephospho-CoA kinase	-
OCU38_RS10280	zapD	2232627..2233367 (+)	741	WP_261823008.1	cell division protein ZapD	-
OCU38_RS10285	yacG	2233461..2233655 (+)	195	WP_152819457.1	DNA gyrase inhibitor YacG	-
OCU38_RS10290	rplS	2233754..2234107 (-)	354	WP_021712249.1	50S ribosomal protein L19	-
OCU38_RS10295	trmD	2234149..2234907 (-)	759	WP_021712250.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCU38_RS10300	rimM	2234929..2235459 (-)	531	WP_021712251.1	ribosome maturation factor RimM	-
OCU38_RS10305	rpsP	2235493..2235741 (-)	249	WP_017027436.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32476.09 Da
• Isoelectric Point: 8.1247

>NTDB_id=89111 OCU38_RS10270 WP_261823006.1 2231080..2231958(+) (pilD) [Vibrio neonatus strain JCM 21521]
MLDYYFTYFPMLFPILVTILGLIIGSFLNVVIHRLPIMMEREWQKEFAEAYPELKLKVPEGVFNISLPGSHCPKCNTPIK
AKDNIPVLGWLCLKGRCRACSTKISARYPLIELLSGALCLTISLYFSPSLYAVALLGFTWVLICATFIDLDTMLLPDSLT
LPLMWAGIALSVLGISPIPLPDAIIGAMAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPLIILLSSLV
GLIFGIIQLRLKKQGIEKAFPFGPYLAIAGWVYLIVGNDIVAWYLSHYIPAY

Nucleotide

• Length: 879 bp

>NTDB_id=89111 OCU38_RS10270 WP_261823006.1 2231080..2231958(+) (pilD) [Vibrio neonatus strain JCM 21521]
ATGCTCGATTATTATTTTACGTACTTCCCAATGCTGTTCCCGATATTGGTGACCATTCTTGGTTTGATTATTGGTAGCTT
TCTCAATGTAGTGATCCATCGACTTCCTATCATGATGGAAAGAGAATGGCAGAAAGAGTTTGCTGAAGCCTATCCTGAGC
TTAAATTAAAAGTCCCTGAAGGGGTGTTTAATATCAGCCTACCCGGCTCACATTGCCCTAAATGCAACACTCCAATAAAA
GCTAAAGACAATATTCCAGTATTGGGCTGGCTGTGCCTTAAAGGTCGTTGCCGTGCTTGTAGCACTAAAATCAGTGCGCG
TTACCCTCTGATTGAGCTGTTATCTGGCGCATTATGCTTAACCATTTCTCTGTATTTTTCTCCGAGTTTATACGCGGTCG
CATTACTTGGGTTTACTTGGGTATTGATCTGCGCCACCTTTATTGACCTTGATACTATGCTGCTGCCTGACAGCCTGACC
TTACCTTTAATGTGGGCAGGTATTGCGCTGTCTGTACTCGGTATCAGCCCTATCCCACTACCTGATGCCATTATTGGTGC
TATGGCAGGCTACCTGTCTCTATGGAGTGTCTACTGGCTGTTTAAACTGCTCACTGGCAAGGAAGGTATGGGTTATGGCG
ACTTTAAACTGTTAGCCGCGCTAGGAGCGTGGTTAGGTTGGCAATCACTGCCTTTGATCATTTTGTTGTCGTCTCTAGTT
GGGCTGATTTTTGGCATTATTCAGCTGCGCCTTAAAAAACAAGGCATCGAGAAAGCCTTTCCTTTTGGTCCGTATCTGGC
AATTGCCGGTTGGGTCTATTTGATTGTGGGTAATGATATTGTGGCTTGGTATCTAAGCCATTACATCCCAGCTTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	67.616	96.233	0.651
pilD	Vibrio cholerae strain A1552	64.789	97.26	0.63
pilD	Acinetobacter baumannii D1279779	50.185	92.808	0.466
pilD	Acinetobacter nosocomialis M2	50.185	92.808	0.466
pilD	Neisseria gonorrhoeae MS11	48.551	94.521	0.459