Detailed information NTG0089106

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCU38_RS05990
• Genome accession: NZ_AP024885
• Coordinates: 1285163..1286581 (-)
• Length: 472 a.a.
• NCBI ID: WP_261824151.1
• Uniprot ID: -
• Organism: Vibrio neonatus strain JCM 21521
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1280163..1291581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU38_RS05965	ihfA	1281263..1281565 (+)	303	WP_021713209.1	integration host factor subunit alpha	-
OCU38_RS05970	purT	1281671..1282846 (-)	1176	WP_261824147.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCU38_RS05975	cdd	1282997..1283890 (-)	894	WP_261824148.1	cytidine deaminase	-
OCU38_RS05980	-	1284118..1284795 (-)	678	WP_261824149.1	CidB/LrgB family autolysis modulator	-
OCU38_RS05985	-	1284797..1285159 (-)	363	WP_261824150.1	CidA/LrgA family protein	-
OCU38_RS05990	sbcB	1285163..1286581 (-)	1419	WP_261824151.1	exodeoxyribonuclease I	Machinery gene
OCU38_RS05995	-	1286722..1287384 (-)	663	WP_261824152.1	hypothetical protein	-
OCU38_RS06000	-	1287481..1288530 (+)	1050	WP_261824153.1	succinylglutamate desuccinylase	-
OCU38_RS06005	-	1288527..1289708 (-)	1182	WP_261824154.1	carboxylesterase	-
OCU38_RS06010	glgC	1290224..1291483 (+)	1260	WP_261824155.1	glucose-1-phosphate adenylyltransferase	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 54344.92 Da
• Isoelectric Point: 5.3695

>NTDB_id=89106 OCU38_RS05990 WP_261824151.1 1285163..1286581(-) (sbcB) [Vibrio neonatus strain JCM 21521]
MHTEQSTFFFFDYETWGVNPAKDRPCQFAGVRTDADLNVIGEPLVIYCRPPADYLPNPEAALVTGITPQKAMQEGLSEPE
FITAIHNEMSRPNTCTLGYNSVRFDDEVTRYTCYRNFIEPYEWSYKNGNSRWDLLDVMRACHALRPEGINWPENEDGNTS
FRLEHLSVANGIEHSNAHDAMADVYATIELAKKVKQFQPKLFDFFFKHRGKQKLNALVDIVTMNPLVHVSGMLSNEHLKA
TLVGPIGWTPTKALIAVDLTQDISPLIELSAEQIKQRLYTKRSELAEDELPIPVKLVHLNKCPILAPLGVLTAEAEQRTQ
LNKEQCIKTQQRLLQHPEIREKLDAVFSQNREYPANSKTVDELLYDGFFSPADKAQMRIIREAEPEVLGALDIQVSDPRI
MPLLFNYRARNFFHTLTDQEQKQWLRQCRDMFENELPNYMLNLENLGSQYQDDEQKMKILKAVYLYVQKLVS

Nucleotide

• Length: 1419 bp

>NTDB_id=89106 OCU38_RS05990 WP_261824151.1 1285163..1286581(-) (sbcB) [Vibrio neonatus strain JCM 21521]
ATGCACACGGAGCAATCCACCTTTTTCTTTTTCGACTATGAGACTTGGGGCGTGAACCCAGCCAAAGACAGACCTTGTCA
ATTTGCAGGGGTTCGCACCGACGCGGATCTTAATGTGATTGGTGAGCCTTTAGTGATCTATTGCCGACCACCGGCAGATT
ATCTGCCCAATCCAGAAGCGGCATTAGTGACCGGAATTACCCCGCAAAAGGCGATGCAAGAAGGCTTATCTGAACCTGAG
TTTATCACTGCCATTCACAACGAAATGAGCCGTCCCAACACTTGTACCCTTGGCTACAATAGCGTTCGTTTTGATGATGA
AGTGACTCGATATACCTGTTATCGCAACTTTATTGAACCTTATGAGTGGAGCTACAAAAATGGCAACTCTCGTTGGGATT
TATTAGATGTTATGCGCGCCTGTCATGCACTGCGTCCTGAAGGCATTAATTGGCCAGAAAACGAGGACGGCAATACCAGT
TTTCGCTTAGAACACCTATCGGTGGCAAACGGCATTGAGCACAGCAATGCTCACGATGCGATGGCCGATGTCTACGCCAC
GATTGAGTTGGCAAAAAAAGTAAAACAGTTTCAACCTAAGCTGTTTGATTTCTTCTTTAAACACAGAGGCAAACAAAAGC
TCAATGCCTTGGTGGATATTGTCACCATGAATCCACTGGTGCATGTCTCTGGCATGTTAAGCAATGAACACTTAAAAGCG
ACCTTGGTGGGCCCTATTGGTTGGACTCCCACTAAAGCCTTGATTGCCGTTGATCTTACCCAAGATATCTCGCCTTTAAT
TGAACTATCCGCCGAACAAATCAAGCAACGCTTATACACCAAGCGTAGCGAGTTAGCAGAAGATGAACTGCCTATTCCAG
TCAAATTAGTGCATCTCAATAAGTGCCCTATTTTAGCCCCGCTTGGAGTGTTAACCGCCGAAGCCGAGCAGCGCACTCAA
CTCAATAAAGAGCAATGCATTAAGACCCAACAACGCTTATTACAACATCCTGAAATACGCGAAAAACTGGATGCGGTGTT
CTCGCAAAACCGCGAATATCCAGCCAACAGCAAAACTGTCGACGAGCTGCTTTACGACGGCTTCTTCTCACCGGCGGATA
AAGCGCAAATGCGCATTATCCGAGAAGCTGAGCCGGAAGTATTGGGGGCATTAGATATCCAGGTATCTGATCCGCGCATC
ATGCCTTTATTGTTTAACTACCGCGCTCGTAACTTCTTTCATACTTTAACCGATCAAGAACAGAAACAATGGCTCCGCCA
ATGTCGCGATATGTTTGAAAACGAGTTGCCCAATTACATGTTAAACTTAGAAAACTTAGGCTCTCAATACCAAGACGACG
AACAAAAAATGAAAATTTTAAAAGCCGTCTATCTCTATGTTCAAAAGTTGGTTTCCTGA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-468)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	67.804	99.364	0.674