Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU38_RS04255 Genome accession   NZ_AP024885
Coordinates   916496..917899 (+) Length   467 a.a.
NCBI ID   WP_261823878.1    Uniprot ID   -
Organism   Vibrio neonatus strain JCM 21521     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 911496..922899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU38_RS04235 rsxB 912287..912868 (-) 582 WP_261823877.1 electron transport complex subunit RsxB -
  OCU38_RS04240 rsxA 912868..913449 (-) 582 WP_021714914.1 electron transport complex subunit RsxA -
  OCU38_RS04250 uvrB 914418..916460 (+) 2043 WP_261824231.1 excinuclease ABC subunit UvrB -
  OCU38_RS04255 luxO 916496..917899 (+) 1404 WP_261823878.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU38_RS04260 - 917892..918251 (+) 360 WP_261823879.1 Hpt domain-containing protein -
  OCU38_RS04265 yvcK 918282..919169 (-) 888 WP_261823880.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU38_RS04270 moaA 919501..920490 (+) 990 WP_261823881.1 GTP 3',8-cyclase MoaA -
  OCU38_RS04275 moaB 920559..921071 (+) 513 WP_261823882.1 molybdenum cofactor biosynthesis protein B -
  OCU38_RS04280 moaC 921078..921557 (+) 480 WP_261823883.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU38_RS04285 moaD 921554..921799 (+) 246 WP_261823884.1 molybdopterin synthase sulfur carrier subunit -
  OCU38_RS04290 moaE 921801..922247 (+) 447 WP_261823885.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51898.32 Da        Isoelectric Point: 5.3629

>NTDB_id=89104 OCU38_RS04255 WP_261823878.1 916496..917899(+) (luxO) [Vibrio neonatus strain JCM 21521]
MPKNKAENQQLKLLMVEDTLSVASLYQTYLATLNLDICIVSSGEAALAHLAQHSIDLMLLDLHLPDMTGMDVLKKVRTQA
PKVPVIFMTAYGSIEVAVEAMRAGAHDFLIKPCEADQLRITVSKAIHQTQNAQHDVLGDVSQYQGFIGSSSSMQQVYKTI
DSAASSKASIFITGESGTGKEVCAEAIHSVSNRSTQPFIALNCAAIPKDLIESELFGHVKGAFTGAATDRKGAAELADGG
TLFLDELCEMDLELQTKLLRFIQTSTYQKVGSSKLSRVDVRFVCATNKDPWEEVRKGRFREDLYYRLYVIPLHLPPLRER
GDDIIEIAYSLLGFTSLEENKNFGKFQEEVLRHFVTYPWPGNVRQLQNVIRNIVVLNEGEEVTLEMLPSPLDRFKVASFS
EDAIDTFLDPEHSDDSRKIIPLAQVERRVIERAIQLCGGSIPSAATELDVSASTLYRKLEKWEKGRG

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=89104 OCU38_RS04255 WP_261823878.1 916496..917899(+) (luxO) [Vibrio neonatus strain JCM 21521]
ATGCCAAAAAACAAAGCAGAAAATCAACAGCTAAAACTATTAATGGTTGAAGATACGTTATCGGTCGCCAGTTTGTACCA
AACGTATCTCGCGACACTTAATTTAGACATTTGTATTGTTTCCAGTGGTGAGGCGGCGCTTGCGCACCTTGCCCAGCATT
CGATTGATCTTATGCTGCTTGATTTGCACCTGCCTGATATGACCGGCATGGATGTACTGAAAAAGGTACGCACTCAAGCG
CCGAAAGTGCCAGTGATATTTATGACCGCTTATGGCTCGATTGAAGTGGCGGTTGAGGCAATGCGCGCAGGAGCGCATGA
TTTTTTGATTAAACCGTGCGAAGCCGATCAGCTCCGTATCACGGTCTCTAAAGCCATTCACCAAACGCAAAATGCGCAGC
ACGATGTGCTAGGGGATGTCAGTCAATATCAAGGCTTTATTGGCTCTAGCTCTAGCATGCAGCAGGTGTACAAAACCATA
GATTCAGCGGCATCCAGTAAAGCGAGCATTTTTATTACTGGCGAGAGCGGCACCGGTAAAGAGGTGTGTGCAGAGGCGAT
TCATTCCGTCAGCAACCGTAGCACGCAACCTTTTATTGCGCTCAACTGTGCGGCAATTCCCAAAGATTTGATTGAAAGTG
AGTTGTTTGGTCACGTTAAAGGAGCATTTACCGGAGCGGCGACCGACCGTAAAGGGGCGGCGGAGCTTGCCGATGGTGGC
ACCTTATTCTTAGATGAATTGTGCGAAATGGATTTAGAGTTGCAGACCAAATTACTGCGCTTTATCCAAACCAGCACTTA
TCAAAAGGTGGGTTCATCAAAACTGAGCCGGGTGGATGTGCGCTTTGTGTGTGCAACCAACAAAGACCCTTGGGAAGAGG
TGCGTAAAGGCCGTTTTCGTGAAGATTTATATTACCGCTTGTATGTGATCCCTCTGCACCTTCCGCCTTTGCGAGAAAGA
GGTGACGATATTATTGAGATTGCTTATTCGTTATTAGGCTTTACCTCCTTAGAAGAAAACAAGAATTTTGGTAAATTCCA
AGAAGAGGTGCTGCGTCATTTTGTTACCTATCCTTGGCCGGGGAATGTGCGTCAGCTGCAAAACGTTATTCGTAATATCG
TGGTTTTAAATGAAGGCGAAGAGGTGACCTTAGAGATGTTACCGTCACCACTGGATCGTTTCAAAGTGGCCTCTTTTTCA
GAAGATGCCATTGATACCTTCTTAGATCCTGAACACAGTGATGACAGTCGAAAAATCATCCCTTTAGCGCAGGTTGAACG
TCGCGTAATAGAAAGAGCCATTCAATTGTGTGGTGGCAGTATTCCTTCAGCCGCGACCGAATTGGACGTGAGTGCATCAA
CACTGTATCGAAAACTAGAAAAGTGGGAGAAAGGACGTGGATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

67.333

96.36

0.649

Multiple sequence alignment