Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RYX39_RS12515 Genome accession   NZ_CP136430
Coordinates   2453088..2454818 (-) Length   576 a.a.
NCBI ID   WP_069487198.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2448088..2459818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS12495 (RYX39_12495) - 2448667..2448801 (+) 135 WP_024122000.1 hypothetical protein -
  RYX39_RS12500 (RYX39_12500) - 2448874..2449992 (+) 1119 WP_255003434.1 NADH-dependent flavin oxidoreductase -
  RYX39_RS12505 (RYX39_12505) spo0A 2450557..2451360 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  RYX39_RS12510 (RYX39_12510) spoIVB 2451636..2452913 (-) 1278 WP_024122004.1 SpoIVB peptidase -
  RYX39_RS12515 (RYX39_12515) recN 2453088..2454818 (-) 1731 WP_069487198.1 DNA repair protein RecN Machinery gene
  RYX39_RS12520 (RYX39_12520) argR 2454854..2455303 (-) 450 WP_010334883.1 arginine repressor ArgR -
  RYX39_RS12525 (RYX39_12525) - 2455400..2456245 (-) 846 WP_255003440.1 TlyA family RNA methyltransferase -
  RYX39_RS12530 (RYX39_12530) dxs 2456242..2458143 (-) 1902 WP_024122007.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RYX39_RS12535 (RYX39_12535) - 2458321..2459211 (-) 891 WP_101861024.1 polyprenyl synthetase family protein -
  RYX39_RS12540 (RYX39_12540) - 2459201..2459455 (-) 255 WP_024122010.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64674.42 Da        Isoelectric Point: 4.6801

>NTDB_id=891032 RYX39_RS12515 WP_069487198.1 2453088..2454818(-) (recN) [Bacillus halotolerans strain Q2H2]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSRIRKTWAKKLAEEIHRELKSLYMEKSTFDTEFKV
RTATRGEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVTEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=891032 RYX39_RS12515 WP_069487198.1 2453088..2454818(-) (recN) [Bacillus halotolerans strain Q2H2]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTGGTCGGTGGCCGCGGTTCATCTGAAT
TTGTCAGATATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTAGATAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTTAATGGCAAACTTGTAACGATTGCGTCGCTTAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAACCATCTTCAGCTTTTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGCTATCAGCGATATATGAAGCTGCTTAAAAAGTTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
ACACCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATCGAATCAGCAAAGCTTGAACTGAACGAAGATGAGCAGCTGC
AAGAAGAGCGCCAGCAAATTTCGAATTTTGAGAAAATATTTGAATCACTGCAAAATGCTTATAACGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
TTCTGAGAGTGTTTCGAACTCCTACTACCTTTTAGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAGCGCTTGAATTTTATTGAGACGCGTCTTAATGAGATCAAGCAGCTGAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTGCAAAGCCT
GAAGCAGGAGCTGGATTCGGTTGGTAAAGATGTTGCAGTGGAAGCGGCAAACGTTTCCCGAATCCGAAAAACGTGGGCGA
AAAAGCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTCGATACGGAGTTTAAGGTC
AGAACGGCGACCCGCGGTGAGGAAGCGCCGGTCGTAAACGGACAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCCACCAATACGGGCGAGCCGCTGAAATCTCTTTCTAAAGTCGCTTCCGGCGGAGAGCTGTCGAGGG
TCATGCTTGCCATTAAAAGCATTTTTTCCTCACAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCGATGGGATCACAAGTGCTATGCATTACGCACCT
GCCTCAGGTAGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGACGGAAATCGGACGCATGATAGCAGGAGTCGAAGTCACAGACTTGACGAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958