Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RYX39_RS02205 Genome accession   NZ_CP136430
Coordinates   435859..436809 (+) Length   316 a.a.
NCBI ID   WP_106021021.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430859..441809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS02180 (RYX39_02180) rapC 432248..433396 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  RYX39_RS02185 (RYX39_02185) phrC 433380..433502 (+) 123 WP_024120213.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RYX39_RS02190 (RYX39_02190) - 433607..433699 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  RYX39_RS02195 (RYX39_02195) - 433846..433956 (-) 111 WP_106021023.1 YjcZ family sporulation protein -
  RYX39_RS02200 (RYX39_02200) - 434109..435473 (-) 1365 WP_095714086.1 aspartate kinase -
  RYX39_RS02205 (RYX39_02205) ceuB 435859..436809 (+) 951 WP_106021021.1 petrobactin ABC transporter permease YclN Machinery gene
  RYX39_RS02210 (RYX39_02210) yclO 436802..437749 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -
  RYX39_RS02215 (RYX39_02215) yclP 437743..438501 (+) 759 WP_106021019.1 petrobactin ABC transporter ATP-binding protein YclP -
  RYX39_RS02220 (RYX39_02220) - 438523..439476 (+) 954 WP_127695980.1 siderophore ABC transporter substrate-binding protein -
  RYX39_RS02225 (RYX39_02225) - 439525..440943 (-) 1419 WP_095714088.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34997.42 Da        Isoelectric Point: 9.8262

>NTDB_id=891003 RYX39_RS02205 WP_106021021.1 435859..436809(+) (ceuB) [Bacillus halotolerans strain Q2H2]
MKLRYLFFLLIILAVTSVFIGVEDLSPLDLFDLSKEEASTLFASRLPRLISILIAGMSMSICGLIMQQITRNKFVSPTTA
GTMDWARLGILISLLLFSSASPLMKMLIAFVFALVGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=891003 RYX39_RS02205 WP_106021021.1 435859..436809(+) (ceuB) [Bacillus halotolerans strain Q2H2]
ATGAAGCTACGTTACTTATTTTTTCTACTTATCATATTAGCAGTCACTTCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTTGATTTAAGCAAAGAAGAGGCGTCAACGCTCTTTGCCAGCCGTTTGCCGCGGCTGATCAGCATTCTAA
TCGCGGGCATGAGCATGAGCATCTGCGGGCTGATTATGCAGCAGATCACCAGAAACAAATTCGTGTCACCGACAACGGCC
GGCACGATGGACTGGGCGAGGCTGGGAATCTTAATATCCTTGCTTCTGTTTTCATCGGCAAGTCCTTTAATGAAAATGCT
GATTGCTTTTGTCTTTGCTTTAGTCGGCAATTTTCTGTTTATGAAAATTCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTAGTCGGTTTAATGCTCGGGAATATCGTCAGCTCAATCGCGACGTTTATCGCGTATAAATATGACCTGATC
CAGAACGTGTCATCATGGCTTCAGGGGGATTTCTCCTTAGTTGTGAAAGGGAGATACGAGCTTCTCTATCTGAGTATTCC
GCTTGTCATCATTGCCTATGTTTATGCGGATAAATTTACAGTGGCGGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTATCCCTGATTACATCACTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAACATTGTATCAATTTACAGAGGAGACAACCTGAAAAACAGCCTGCCGCACAC
TGCGCTGCTGGGAGCGGTTTTTGTTCTGTTTTGCGATATATTGGGCAGAGTCATTATCTTCCCATATGAAATCTCGATTG
GTCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

100

0.538