Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RYX39_RS02180 Genome accession   NZ_CP136430
Coordinates   432248..433396 (+) Length   382 a.a.
NCBI ID   WP_024120212.1    Uniprot ID   A0A7G7UCE4
Organism   Bacillus halotolerans strain Q2H2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 427248..438396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS02160 (RYX39_02160) - 427622..428302 (-) 681 WP_263463665.1 ABC transporter ATP-binding protein -
  RYX39_RS02165 (RYX39_02165) - 428318..429772 (-) 1455 WP_316961171.1 ABC transporter permease -
  RYX39_RS02170 (RYX39_02170) - 429985..430668 (+) 684 WP_188323527.1 response regulator transcription factor -
  RYX39_RS02175 (RYX39_02175) - 430655..432079 (+) 1425 WP_101860980.1 HAMP domain-containing sensor histidine kinase -
  RYX39_RS02180 (RYX39_02180) rapC 432248..433396 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  RYX39_RS02185 (RYX39_02185) phrC 433380..433502 (+) 123 WP_024120213.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RYX39_RS02190 (RYX39_02190) - 433607..433699 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  RYX39_RS02195 (RYX39_02195) - 433846..433956 (-) 111 WP_106021023.1 YjcZ family sporulation protein -
  RYX39_RS02200 (RYX39_02200) - 434109..435473 (-) 1365 WP_095714086.1 aspartate kinase -
  RYX39_RS02205 (RYX39_02205) ceuB 435859..436809 (+) 951 WP_106021021.1 petrobactin ABC transporter permease YclN Machinery gene
  RYX39_RS02210 (RYX39_02210) yclO 436802..437749 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45690.75 Da        Isoelectric Point: 5.2483

>NTDB_id=891001 RYX39_RS02180 WP_024120212.1 432248..433396(+) (rapC) [Bacillus halotolerans strain Q2H2]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVSDHIERAEFYFKIAEAYYYMKQTYF
SLIHIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALEMAEAEQKAQLVGRAFYNLGLCYYNQDLLD
PAIEHFEKAVSTFENSRITNSLPQAYFLITLIYYKRGKHEKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQAQPNTEG
IERCFRYLKNKNMYADIEDLGLEVAKYYYEQKWFELSASYFLRVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=891001 RYX39_RS02180 WP_024120212.1 432248..433396(+) (rapC) [Bacillus halotolerans strain Q2H2]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACCTTCAGCGT
GCCGGATGCCGAGGTGCTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGTTATATT
ACTCACTAATGGAATTTCGCCACCAGCTTATGCTTGATTATCTCGAGCCGCTGGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCACGAAATATAGACAGCAACCAAGCTGATCTGAAAGGGCTTCTCGATTATTATGTGAATTTTTT
CCGCGGAATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATATTACAAACAGGCGGAGAAAAAACTTTCTT
TTGTTTCCGATCATATTGAACGGGCTGAATTTTATTTTAAAATTGCGGAAGCTTATTATTATATGAAGCAAACGTACTTT
TCATTGATTCATATCAAAAATGCATATGAAATTTATGTAGAGCAGGAAACCTATAATGTTCGGATTATCCAATGCCATTT
TGTGTTCGGGGTTAACCTTATGGATGAGAGAAATTTTGAACAAGCCGCACGGCATTTCAAATTGGCGCTGGAGATGGCGG
AAGCGGAACAAAAAGCCCAATTGGTCGGAAGAGCATTTTATAATTTAGGGCTGTGTTATTACAATCAAGACCTCCTCGAC
CCTGCCATTGAACATTTTGAGAAAGCGGTTTCCACTTTTGAAAACAGCAGAATCACCAATTCTCTGCCTCAAGCATATTT
TTTAATAACACTTATTTATTATAAACGCGGAAAACATGAGAAGGCCTCGGAATATCACAAGAGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGATTACGCGGTAAAATTTGAGTTTTTACAATCCCTATATCAGGCACAGCCCAATACAGAAGGA
ATCGAACGATGTTTCCGATATTTAAAAAATAAAAATATGTATGCTGATATAGAGGATTTAGGCCTAGAAGTAGCAAAATA
TTACTATGAACAAAAATGGTTTGAACTGTCTGCTTCCTACTTTCTTAGAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(224-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UCE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

95.026

100

0.95
  rapF Bacillus subtilis subsp. subtilis str. 168

56.316

99.476

0.56