Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RYX39_RS01995 Genome accession   NZ_CP136430
Coordinates   375682..376119 (-) Length   145 a.a.
NCBI ID   WP_024120178.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 370682..381119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS01965 (RYX39_01965) - 370814..371950 (+) 1137 WP_127696008.1 zinc-dependent alcohol dehydrogenase -
  RYX39_RS01970 (RYX39_01970) - 371993..372418 (+) 426 WP_198098571.1 RDD family protein -
  RYX39_RS01975 (RYX39_01975) - 372500..372835 (+) 336 WP_101863959.1 YckD family protein -
  RYX39_RS01980 (RYX39_01980) - 372987..373715 (+) 729 WP_106021062.1 AAA family ATPase -
  RYX39_RS01985 (RYX39_01985) - 373788..375221 (+) 1434 WP_255004795.1 glycoside hydrolase family 1 protein -
  RYX39_RS01990 (RYX39_01990) nin/comJ 375257..375655 (-) 399 WP_255004793.1 competence protein ComJ Regulator
  RYX39_RS01995 (RYX39_01995) nucA/comI 375682..376119 (-) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  RYX39_RS02000 (RYX39_02000) tlpC 376317..378029 (-) 1713 WP_095714427.1 methyl-accepting chemotaxis protein TlpC -
  RYX39_RS02005 (RYX39_02005) hxlB 378142..378699 (-) 558 WP_101863966.1 6-phospho-3-hexuloisomerase -
  RYX39_RS02010 (RYX39_02010) hxlA 378705..379337 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  RYX39_RS02015 (RYX39_02015) hxlR 379569..379931 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15973.68 Da        Isoelectric Point: 4.1966

>NTDB_id=890999 RYX39_RS01995 WP_024120178.1 375682..376119(-) (nucA/comI) [Bacillus halotolerans strain Q2H2]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=890999 RYX39_RS01995 WP_024120178.1 375682..376119(-) (nucA/comI) [Bacillus halotolerans strain Q2H2]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTACCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917